RNA id: TU210980


Basic Information

Item Value
RNA id TU210980
length 1606
lncRNA type read_through
GC content 0.33
exon number 2
gene id alpk2
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 735722 ~ 806106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatgtatatgtgtatatatatatatatatatatatatatatgtatgtatttaatattttaatgtatttaaatatataaaaatattaaatgtgtatattaaatgtgtacatgcatgcttaataataataaaaatacaaaaataagcatttaaatatttcaaataaaaactgcGTAGcattaattcagatttttatgaTTGCAGCTATAAGGGGTTCAGAGGAAACTGTGCCACGTCCTTCATCGATCAGTTCAAGGTTCTTCATCAGTGTAACAGGTACTGTGAGATTCTGGGCCTGACGTCTCTTCAGCCCAAGCCCAAACGGACCGTCGGCCCGCCAAAGCCAAAAACACAGCCCGCACCCAAGAAAAAAACCTTCGGCCCCGTTCTGAAGGGCAAATCCTGATGTCTTCTTGTAGGACGTTGGCCGTTTTCTTGCTCAGGGACAAATGTGTTTCTgagatgtttctttaaaagtaaGATGACATTCATCTGTAAGGACAGTAGGGAGGTTACTTCTTTCTTGAGAGCTCTCTTGCGCTATTATAAATgagcttattatttttatttcattttgtatgtatattttttttaaggggcGAGTTGACTTTGAATCGATGCAATGCTTtttcaatgtaatatttttagtgtAAACCAAGGAAATATCAGCTACAGTATTTTCTCctggtttgttttgttgagAAGTCGTGCCTGTGGTGCTTCCGTCTGATTCTTTAATATTAGCCTGCTGACGCTACTTAtgattgtttattataatatgtgCAATAAGTACTTAGTTCATCAAACTGCTCAATCTTAAACAGACATGTACTTTACGAGTGATATTAACGTACCGCTTCTCATTTTCAacgttaaaatactttttcacgCGCATTTTTAAcgagtttaatatttattttttggtgaattatgGATTTGTTAAAGTTCATCCGCTCTGTTTCTGGGAAGGAAGGACGAGGTGGTAAATCTGATACTATGGAAAGATTTGTACACTTGCCCTAGTAAACAGCTGTTGATTTGCCTCAGTAAGAATGACAATCCTCCACCTTCACGTTTCCATCATCCTCCTAAAGTCAAATGACTTATTGCTTCATTGCTATATATAAGCACACGCGTTTCAAGCGTTTGTCCTGTTCAAGTTAACGAACGGCACAAATCAATCACCTGAAATTAAAAACTGTGATCGTACTGTAGCTGCTTTCTGCCAATCTAGTCTTATCTATTTGTAGTCTTAGTGATCGTGGATTGAAGGTCGAAGGTTATCAGTTTCTTGGCTTCACTGAACTGCAATACACTTGTATTGGGTTTGAATGGTATATTGTGTAttacgtttttttctttttctttatatgttatgttgtgtattaacaagtagttttttttttcctttgagtCGTCTGGGCTTTAATTtaatcacaaacaaaaaaaaaaaaaaatttatttattttattttgtttataaatgttatatataacaatacatttaacaataattaaattatacattttatgaaaacttattttagaatatcatattttttaaatgacatgtaATTTAGCTTTTGCAGTCTAGAGAGAAATCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210959 lncRNA upstream 9130 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 301600 431624 ~ 434122 (+) True G142729
TU210760 lncRNA upstream 532547 202787 ~ 203175 (+) True G142672
TU210740 lncRNA upstream 539520 182416 ~ 196202 (+) True G142658
XR_006247457.1 lncRNA upstream 555673 172944 ~ 180049 (+) True LOC122326263
TU211038 lncRNA downstream 110515 916621 ~ 916963 (+) True G142866
XR_006247435.1 lncRNA downstream 242272 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 242415 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 242415 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 264255 1070361 ~ 1081301 (+) False LOC122326171
XM_043222066.1 mRNA upstream 12663 676866 ~ 723059 (+) True ccbe1
XM_043221008.1 mRNA upstream 240558 437774 ~ 495164 (+) True LOC122326268
XM_043221566.1 mRNA upstream 411962 263515 ~ 323760 (+) True mapk10
XM_043221567.1 mRNA upstream 411962 263515 ~ 323760 (+) False mapk10
XM_043221570.1 mRNA upstream 416668 263514 ~ 319054 (+) False mapk10
XM_043221060.1 mRNA downstream 72123 878229 ~ 901350 (+) True prlra
XM_043221057.1 mRNA downstream 95567 901673 ~ 915039 (+) True agxt2
XM_043221966.1 mRNA downstream 120252 926358 ~ 935922 (+) False LOC122326806
XM_043221965.1 mRNA downstream 120254 926360 ~ 939559 (+) True LOC122326806
XM_043221937.1 mRNA downstream 136747 942853 ~ 948284 (+) True arid6
XR_006247444.1 other downstream 244732 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 347003 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 347003 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 421907 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1427553 2233659 ~ 2237195 (+) True G143321

Expression Profile