RNA id: XM_043221343.1


Basic Information

Item Value
RNA id XM_043221343.1
length 5939
RNA type mRNA
GC content 0.44
exon number 12
gene id alpk2
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 735722 ~ 806106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGTGAACCTCATATTCTCCAGACCTACATCACCACTGAGTGTATTTGCCCAtttggatgtaaaaaaaaaaAGGGATCTGATGCTGAACGCTGGCTTCTTTAGGAGTGAGATCTTTGGACTTGGTCTCTCATGACAGATGCCCAAACTGAGGCAGTGACGTGTGTGCAGCGATCCATAGAGAAGGAGATGACAGCTGAGCGGGTTGACATGGCCACCCCAGACAATCTGCTGTTCCTGGACACAGATGCTGTCAACTCTTCCTTCGCTTCACCGCCCATAGAGCGAAATGAGCCCGCTCGTGCCACGGACAACCAGACAGACGACAGCTTTAGTTCAGTCCCTGATCAACACCCTGATCCAGACTCAGGAAGCTCAGGATTAATGCCTGTTCCGTGCCAGGATGGGACCACTGAAATCCATAATACAAACATTGAAAAGGAAAATGAGAGTGGTTTAGTCTTAACACAGCCCCTGGATCACACCGAAAGgatagaaatgacaaaaaatactgCTGCTGTGATGGAGAATAACAGTATCACAAACAGTACTAATATCCCTAGCCTAGTTCAACTACTGCATGGAAGTCAAAATGACTTCCATGGTAACTCAAACATTAAAGAGGATTCAAATGAGGCTCATGGCATTTTAATGAGTTCATTAATAAGAGAACACAACAGACAAGAAGAAATGAGCCAAGACACCATTTTAAACCAATATGCCTCCTTTGAGAACCCTGGGCTTGATGTTAACCCAGTTGCTAATGATGAAGATTCCTTAGTAAATACTGTCTCTAATGTAATGAACGGTGCAAGCAATGAGACCGATGCGAGTTCTTCTGAAACCCTCACCCAGGATACATCTGAAGGTGTTGATATAGCAGTGGAAGCTGTGACTGCCTATAAAACTCATTCAGAAATACATGACATTGTAGAGGACTTGACATGTTGTGGCTTTacaacctctcagatacagaagAGAGAAGATCAACAGACTGGCGTTCATCTATGTTTGGCTGATTTGCATGAAGCAGACACTCTAAACATCTTAAAAGATGCCTCCGaagtaatagatttttttgggtTAAACAAAACTGTCTTGGAAACAGCTGACTGGCTGGTCAATGACAGTGAGATCATTCAGACTGCAAATCAAGACTTGGTCTCCTCAAATGTTGAGTTTTGCACCGCTGCTTTAACCCAAACGGTTCCAAATCTTCTACAGGGTTCAGAACATGTAATGGAATCAGAATCCAACAGAACTGAAGATTCCATGCTCGACAGAACGATTGAAACAAAATTCCCATTGGATATTAGTTGGGTGCAACCGTTGACATCTGAGACAACTGAGTCACTTTTCCACCAATCCATGCTTAGAACCTCACAAATTGGTGGAAAACATGAGAAGGATCTCTCACAAATGATCCCTTACCCAACACCTGTCATGAATAAAGATTTAGGGAAATGTTCTGAGGAGATCGATGGTGCTTGCTTAAAGTTCACAAGAACGGAACGTGATGTTGAGGCTGGTAGCGAGTTGTGGCTGGACGCTTGCCAGTTCTTGGCAGGTGAAGAGGTTGACGGTGCTATTTTTGACAAGTGGGGTCGTTCCTGTCCTCCCAGCCCCACCACAGCCCattcagacaaaacaaaagcctCGGATTACTCCAGGAGAGAGAACATTTCAATTGACCACCACAGTGAAGACTGGGAGCTGAGGTTTCCACCTGTTGAGAGGTGGTCGTCCTCGGACAGCTGGGCTAGTGCACTGTCAGACTGGTTCCAGGCAGTTAACACCTATTCAGAAGACTCTTTTACCAGCGCTAGCACATCGAGCACTGGTCCTAAGCACACTATGGCAATCCAAGACAACATTTTGGAGCATCCTGATAATGCAAACATCACTGGACAGACAAGTCTGAACCTCTCAGAACCAGAAGAAGCAGGTCAGCCCTTGAGTAGAGGACTAGTTGAGTCTGATAACACTAATGGAACTCTTTTTAAACAAGCTGATAAACAAGCTGATGAAGATAGACTTCCTTCTCATtcagactcagacagacaggaTGATAAAACGACAGAGAACGGCACGAGTTTGTCGGAGAGGTCTGAATCCAATAAACCAGATGCAGCCATGCATATGCTTAATGCAACAAAATATCCTAAAAATGAGGCCAGTGACAAACTTCATGGAAATCAGCAAAACCCTGGAGAGCTTTGGAGTACAAAGcCTGAAGGAAATGAACTGGTAGAGGTGACCGGTGACAGAGTTTCCCAACTCGGGTTGGCCTTTGAGGAGGAATGTCAAAGCAGTTTTACTTCTCAAAGGATCTACACCGGCGATAAGAATTTAAGTGACTGTGTGAGCGGTGAGGAGTGGTGTCACGGCTTCGATGTTGCTCTTCACACATGTCCCTCTCAATCGAACCGTCACGCGTCTTCTGAGGCGGGAAGTGCCGAAGGAAATGAAACGTTTGTGCATTTTACCACTGAGGAAAGCGGCGTGAAGCCAAAGGGGGAggaaaaaagtacatttccaCAGTTTATTATGCCGCTTGCTCCACTCAACACTTTTCTCCATAGTAGTTTATTGAAAAGTTCACAGGATGATCTAGATTTTCCACCTAAAGGGATTATTAATGAGACGTGCCTTAAGAGTGATCAAAAATCAGTCAGTAGTGACGATTCATCTGAAGATCTCTTTCATACATGTCCTGACCAGTCTTTATCTTCATCCAGTGGAGATTCAGATGATCCTTCTATCAAGGacactaaaagaaaaacagagtaCAGTGATGCCTGCGACATCAGCAAAGAGCTTTCAAAGTTAATTTTACTCACAGGACAGCATTTTATGGTGTCTGAAGACAAACATGTTGCATATGTCACTCTAGACTTGGAGGAACcaagtttaaataatttctcaTTGTCAAACTACGAGCAACGACCCAAAACAGACAATATGCCTCACAAGACTTTCAAAACTTCCTCAGATGGTAAAACACGCTCTAAACATAAGGAGAAACCAGCTGAGAAGCAGCAACATGGAATTCAGACAACAAAAAAGCAAGATCTTCAGCCCCCATCCCACATAAAAAAGGACTTAAATTCAGAAGGAGATGGTTGTGAAAACCGCCCAGTTACTGTTATTGAAACCATTGTCATCACAGAGAAGATCGCTCCTAAAACCCaagggaagaagaaaaagaagccCCCACAACATGGGACACCAAAACCTGAAAATGATCTACTGAGTGACAGAAGTGGCAAGACTGAGAACCATGACGTGAAGGTAGCATTAAATGGTCTAGATAAACCAGCATCTCATCTTCCCACCAAAGTGGACATTACTAACAAAGATAGCACTCAGAATGTCGTGTCAGTGAGACCCAAAGTAGAACCCAGTGGGAGTTTTGGTGCCAAGATGGATGCTGGCAATGTAAGTGCCACTCAGAAAGCCACCCCTATAAAACCTAAAGTAGATGCCAGTAACACAGCCAAGGTGGAAAATAAGACGTGCACTTCTGATTCTTCAAGCACGTGTTTACCCAGCATGTCGAATGATGATATCAAGCGCAGGCGGATCGCAGACGACCTGTCTGGAGCAGTTCCGATAAGAACGAGGCCACAGCTGCCCGCAATTTTCCGCCAAGCAAGAAAAGACGGAGAAGATGCGACCAGGAGAGCTTATAGTGAGGTTGTCAAGCAGAAGACTCCAATGCCCAAAGAAGTTGTGGTTCCTCGTGTAATCTCAGAGATCCAGGCTGACCCAGTCCCCGCTGACCCTCAGAACATCTTGCTTTGGTGCAAGTTCAGTCCCGTCCCAACTGATGCCACCATTAAGTGGACTAAAGAGGGAACAGTGCTGTCAGagataaacaaaatAGAGAAGGATGATGGCCGCTTCACTTTGACAATCCTAAAGGCTTGCAGTAAAGATTTAGGGCTGTATAAATGCAGCCTGAGTGCTGCCAACATTTCTGTTTCGACCTCAGAGTACCATCTCACGTCTGAGGtgctTATGGAACTAGTCATTCCGAGTCATGATCAGCCAGCTGAGCCCAGGGTTGTGGACGGCGATGAGGAGAACATCCAGTGCAGCCCGCTTCTCTTTAAGGAAGATTTTCTCTCAGATCAGTACTTCGGAGAGAATCACCCAGCGAGCATCGTGACCGAAAAGGTCCACTTCGGTGAAGGCATGCATCGCAAGGCTTTCAGGACCACTCTTAGAGAAGGCAATCTGCCGAGCTTCAACCCCGGCCATCCCTGCGTCCTGAAAGTACACAACGCCATCAGCTATGGGACCAAAAATAATGAGGAGCTTGTCCAGAAGAACTACAGCCTGGCGGTGGAGgAATGTCACGTGCAGAATACCGCCAGGGAATATATTAAAGCATACAATAGTGTGGCCAAGTCTGCAGAAGCATTTGGAGAGGTGCCAGAAATCATCCCTATTTATTTGGTGCACCGGCCATCTAATGACGTCCCTTACGCCACGCTGGAGGAGGAGCTGCTGGGAGATTTTGTGAAGTACTCTGTGAAGGACGGGAAGGAGATCAACTTGATGCGCAGAGACTCTGAGGCGGGACAGAAATGCTGTGCCTTCCAGCACTGGGTCTATACACAGACCGAAGGCAACCTGCTGGTCACCGATATGCAGGGTGTGGGGATGAAACTGACAGATGTTGGGATTGCCACCTGTAAAAAAGGCTATAAGGGGTTCAGAGGAAACTGTGCCACGTCCTTCATCGATCAGTTCAAGGTTCTTCATCAGTGTAACAGGTACTGTGAGATTCTGGGCCTGACGTCTCTTCAGCCCAAGCCCAAACGGACCGTCGGCCCGCCAAAGCCAAAAACACAGCCCGCACCCAAGAAAAAAACCTTCGGCCCCGTTCTGAAGGGCAAATCCTGATGTCTTCTTGTAGGACGTTGGCCGTTTTCTTGCTCAGGGACAAATGTGTTTCTgagatgtttctttaaaagtaaGATGACATTCATCTGTAAGGACAGTAGGGAGGTTACTTCTTTCTTGAGAGCTCTCTTGCGCTATTATAAATgagcttattatttttatttcattttgtatgtatattttttttaaggggcGAGTTGACTTTGAATCGATGCAATGCTTtttcaatgtaatatttttagtgtAAACCAAGGAAATATCAGCTACAGTATTTTCTCctggtttgttttgttgagAAGTCGTGCCTGTGGTGCTTCCGTCTGATTCTTTAATATTAGCCTGCTGACGCTACTTAtgattgtttattataatatgtgCAATAAGTACTTAGTTCATCAAACTGCTCAATCTTAAACAGACATGTACTTTACGAGTGATATTAACGTACCGCTTCTCATTTTCAacgttaaaatactttttcacgCGCATTTTTAAcgagtttaatatttattttttggtgaattatgGATTTGTTAAAGTTCATCCGCTCTGTTTCTGGGAAGGAAGGACGAGGTGGTAAATCTGATACTATGGAAAGATTTGTACACTTGCCCTAGTAAACAGCTGTTGATTTGCCTCAGTAAGAATGACAATCCTCCACCTTCACGTTTCCATCATCCTCCTAAAGTCAAATGACTTATTGCTTCATTGCTATATATAAGCACACGCGTTTCAAGCGTTTGTCCTGTTCAAGTTAACGAACGGCACAAATCAATCACCTGAAATTAAAAACTGTGATCGTACTGTAGCTGCTTTCTGCCAATCTAGTCTTATCTATTTGTAGTCTTAGTGATCGTGGATTGAAGGTCGAAGGTTATCAGTTTCTTGGCTTCACTGAACTGCAATACACTTGTATTGGGTTTGAATGGTATATTGTGTAttacgtttttttctttttctttatatgttatgttgtgtattaacaagtagttttttttttcctttgagtCGTCTGGGCTTTAATTtaat

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210959 lncRNA upstream 66443 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 358913 431624 ~ 434122 (+) True G142729
TU210760 lncRNA upstream 589860 202787 ~ 203175 (+) True G142672
TU210740 lncRNA upstream 596833 182416 ~ 196202 (+) True G142658
XR_006247457.1 lncRNA upstream 612986 172944 ~ 180049 (+) True LOC122326263
TU211038 lncRNA downstream 110686 916621 ~ 916963 (+) True G142866
XR_006247435.1 lncRNA downstream 242443 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 242586 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 242586 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 264426 1070361 ~ 1081301 (+) False LOC122326171
XM_043221923.1 mRNA upstream 6503 779285 ~ 786532 (+) True oacyl
XM_043221921.1 mRNA upstream 13892 766193 ~ 779143 (+) False znf532
XM_043221060.1 mRNA downstream 72294 878229 ~ 901350 (+) True prlra
XM_043221057.1 mRNA downstream 95738 901673 ~ 915039 (+) True agxt2
XM_043221966.1 mRNA downstream 120423 926358 ~ 935922 (+) False LOC122326806
XM_043221965.1 mRNA downstream 120425 926360 ~ 939559 (+) True LOC122326806
XM_043221937.1 mRNA downstream 136918 942853 ~ 948284 (+) True arid6
XR_006247444.1 other downstream 244903 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 347174 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 347174 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 422078 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1427724 2233659 ~ 2237195 (+) True G143321

Expression Profile