RNA id: TU210993



Basic Information


Item Value
RNA id TU210993
length 2387
lncRNA type read_through
GC content 0.39
exon number 2
gene id G142832
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 759275 ~ 812057 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tttatttatttatttattttttacttatttgtattttttttttattataagatTTTATAGATGCAAGCTTGCAATGTTTAAGCATGAGAGcagaaaatcaacaaaacaaagaagTCAACACAGCCTTGAACTAGATTACAAAGAGGGTTGCCAGATTTAACCCGGTTAGCCGTACCTGCAGCGTTGAAACCGGTCAAATCAACAGAACATATCTGTAAAAAGTAAACCCTCACAATAAAGCGAAACCCTGTCCTCCTGTTTGCTTGTTCTTCGACTTTCGGAACAATCcagtaaaatgataaaacacttctttatctttttatcaACCTTCGGGTTAAACTGAAACCCAGTGGTTGTATTTACAAACCCAACTGCCAACAGTCACAGAAGTAGAAATACCGTGAACGTGTTTACCTTGAAAGCAATCGGCTAAAACCCATCCGATACCACTTCAAATCCTATTTAGTTGATTTCCTGTCATTTGTTCCTAGTGTCAATAAAACAAACGCAGACTTTTCCTATAAATCAGTAAAACACCACCACACCTAAATTCCATTTATCAGTTTATTTCGAACGAAGTTATACGAATCGCAAGGTCTCGCGGTGAGCAGGAACCAGACAGTAAATGTTCCtcatcaataaaaaaagaactgccCCTACAAAAGAGGAAGggtaatttataacaataacaataatcataatattatcACCTACAGGGCCACAGCGGCCCGAAAAAAATGTGAGTGGGGAGGTGTACAGATAAAAGACCGAAAAAGAAAACGAGAACCAGTCTGAAGTCTGACTCCAGGTGGAGCAGATCCGGATTCACACTGACCAACCAAGACTGACTCCGGATCAGCTGCAGAGCCGAGCTGGGATCTGATATGTTAGCAGCAGGCCGATTATAAACGAGAGATATTGCACCAAGGAAACGAGtgcttttaaaagaacaaaatagaTAATCACATTcaagttcacaaaaaaaagaaaaaaagaaaaaaccaaacaaacaggTGACATGACCCTAGTGTGTGATCAATAAAGTGCCCTTTTAGGTAAAGTGGTGTTAGAAGAaacagaaaggaagaaagaaagaaagaaagaaagaaagaaagaaagagtttaCGTCCTGAAAGTCTACTAGACTTGCAGTGTTGAATCACAGCGCTTTTAAGATAGCTTCACTCTGTGTCGCTCTTTAATACTTTCAAACAGATTTAACACGTACAGTAAAAGTCCAATCTCGTCTCTTTCCCccaaaacaaactcatttacagcATTATGAACAGGTAGAATCATAATAAAGATAAGAACAATACTTATTACAATTGAAGAAAACCCTCTCCGACAAACCCGTGTCCGATGCATGTCGACGTTTTCCACCTTTGCTCTCTCAACCAAGAAGGAGAATAGCTTTATAATTACTACGTAATCATATTGAAACACAAGATACATGTTCATGCCAGTTTTCATAGCAATACAATAatcatgttgattttttttttccttgttgttgtttgttttttcgtttttttgtttgtttttattacccACAATGATATGGATATTGACTATAGCCAGGCCACCGATGCATTTCCGATAACGTTGTTTAAAATAGTAAACCACATTGTTGGTACAAATATCCGTTTACTCCGTAAGAATGATAATAACAGcgataataataaactattaaaaacgaTTCCCGTTGCTTCTTGGCGTtgcaaaaaagaagataaaaaaataatcctcGACGAAGGAAGAAAGGGAGGAAGAGGGGAAACTTGGCGTAGTTTGAGGGATAAGGGAGGATGAGGATGTGTCCTTCATCCTGGCTGTGATTCCTAAGGTAATCTGGTGTTAGTAAGACCTGATATAAAAGAGTTGCCTCTTCACTGAACTTAGACTGTATTTGTGAAATTAATGGGATTGGTTGCGGTGGAATATCAAGGCCACGCCCACTCTGAGGCCACACCCAAATACTGAATTTTCTCATTTATCAATATAAAAGTAGCTACGGCCTCAGAGCTGGATATTGAAATAAAACGTGTTGATTTGTGGGATACTGCAGGGCTGTTTGGCGTCGAAACGGGTTCACAGCCAATGTCGTTCCAGCTAGACAGACTACATGCATATACTGTGCTGACATCACACACCTGTGACCGCCGGGATCTGGCTGTACAATGGCAACtcgagagtgtgtatgtgtgagtatagacgtgtgtgtgagagtgtgttgtACATGTCTTTGCTCGTCGGTTGCGTTAGGAGATCGCATGTATATAAAGGGATTTCTTTAGTCGACGCCCTCGAAGCCTTGAGCGTTTTCCACCGCCATCAGAAGCTTCTCGCGCAGGTCTTCAAATGACTCGTACGTCGGGAGGTCCAGG

Function


GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210959 lncRNA upstream 32683 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 325153 431624 ~ 434122 (+) True G142729
TU210760 lncRNA upstream 556100 202787 ~ 203175 (+) True G142672
TU210740 lncRNA upstream 563073 182416 ~ 196202 (+) True G142658
XR_006247457.1 lncRNA upstream 579226 172944 ~ 180049 (+) True LOC122326263
TU211038 lncRNA downstream 104564 916621 ~ 916963 (+) True G142866
XR_006247435.1 lncRNA downstream 236321 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 236464 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 236464 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 258304 1070361 ~ 1081301 (+) False LOC122326171
XM_043221955.1 mRNA upstream 3623 752820 ~ 755652 (+) True rx3
XM_043221828.1 mRNA upstream 8631 746242 ~ 750644 (+) True cplx4a
XM_043222081.1 mRNA upstream 16329 730792 ~ 742946 (+) True lman1
XM_043222066.1 mRNA upstream 36216 676866 ~ 723059 (+) True ccbe1
XM_043221008.1 mRNA upstream 264111 437774 ~ 495164 (+) True LOC122326268
XM_043221060.1 mRNA downstream 66172 878229 ~ 901350 (+) True prlra
XM_043221057.1 mRNA downstream 89616 901673 ~ 915039 (+) True agxt2
XM_043221966.1 mRNA downstream 114301 926358 ~ 935922 (+) False LOC122326806
XM_043221965.1 mRNA downstream 114303 926360 ~ 939559 (+) True LOC122326806
XM_043221937.1 mRNA downstream 130796 942853 ~ 948284 (+) True arid6
XR_006247444.1 other downstream 238781 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 341052 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 341052 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 415956 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1421602 2233659 ~ 2237195 (+) True G143321

Expression Profile