RNA id: TU211224


Basic Information

Item Value
RNA id TU211224
length 829
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC122326311
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1227998 ~ 1229055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCCTGCTCCATTCCTTCACATTCTGCCGGCCCACCAGCAGCCCCATTCACAGCTGCTCCATCATCACCTCACCCAGGATGGGCAGGGTGGGCCAAGCCAGAGAAGCCAGTCCAGCACCATGCAGCAGAAGACCCAGGTCAACAAATCCAACTATGGCAGCTCCCCTTATTGGGGCAACTGAGCGCAGTCCACAGCGCAGGTGCTGTCCCGCACCGATGACACGCCGATCAAAGCAGAGGGACACCCGTACACACTaccatcatcctcatcctcctcccACGTTCTCATCTCCCTTTTTCAAAGTTTTGGCTGTTGTATGtaaagtatatttatgtatgtatttatacagtatatatgtattgGTAGGATATGAAATGTggtttttctgcattttgtttttgaaggatttttttttttttttttttttcattgctaaCTGGCTAAGAGGATAtgatgagagagagaagtgATGAGAACAGAAGGGTGAATATACTTGAAGCAGAGCAAGCATCATGATTCGAACATGggagtttttatttgtatacataACCCTGATAATGTATGTACATTACTGCTAAGCTTGATCACTTGATGGTGAAgcctttttttaacttttgtatTTTGCTCTTCTCCCACCCCCTTCACCTGTGAACTTTTTTTCTATCGAGGGGGAATTTAATTTCAACGCTTAATTTTCTTCCCTCTGCCCTTCATTTGTGTCCCCTGTCCCTCTCCCCCCCCCAAACCACCAAATTGGCTAAACGGTAGCATTTTAgatcagatttcattttaacattggTTTTACCCTTgttgtcaaaataaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211166 lncRNA upstream 25590 1201376 ~ 1202423 (+) True G142950
TU211168 lncRNA upstream 26769 1200736 ~ 1201244 (+) True G142952
TU211191 lncRNA upstream 49374 1108322 ~ 1178639 (+) True G142965
TU211190 lncRNA upstream 121061 1106746 ~ 1106952 (+) True G142964
TU211189 lncRNA upstream 122196 1105485 ~ 1105817 (+) True G142963
TU211156 lncRNA downstream 503 1229548 ~ 1236155 (+) False G142943
TU211157 lncRNA downstream 503 1229548 ~ 1236155 (+) True G142943
TU211158 lncRNA downstream 503 1229548 ~ 1236155 (+) False G142943
TU211223 lncRNA downstream 12826 1241871 ~ 1246809 (+) True G142977
TU211465 lncRNA downstream 533337 1762382 ~ 1762837 (+) True G143139
XM_043222172.1 mRNA upstream 16 1213900 ~ 1227997 (+) True ubap2a
XM_043221700.1 mRNA upstream 15224 1203394 ~ 1212789 (+) True dcaf12
XM_043221452.1 mRNA upstream 28240 1192399 ~ 1199773 (+) True ubap1
XM_043221455.1 mRNA upstream 43943 1180455 ~ 1184070 (+) True nudt2
XM_043221456.1 mRNA upstream 71873 1153107 ~ 1156140 (+) True glrx
XM_043221088.1 mRNA downstream 9410 1238455 ~ 1241794 (+) True mlnl
XM_043221089.1 mRNA downstream 11340 1240385 ~ 1241794 (+) False mlnl
XM_043221085.1 mRNA downstream 19069 1248114 ~ 1255051 (+) True aqp7
XM_043221064.1 mRNA downstream 29131 1258176 ~ 1277613 (+) False kiaa1328
XM_043221066.1 mRNA downstream 29131 1258176 ~ 1275315 (+) True kiaa1328
TU211153 other upstream 71871 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 71871 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 172666 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 1004614 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1717807 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 2086711 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 2089190 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 2386115 3615160 ~ 3615231 (+) True trnam-cau_115

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU171199 True 286 lncRNA 0.37 1 CI01000028 9219350 ~ 9219635 (+)
mexican tetra (Astyanax mexicanus) TU171199 False 934 lncRNA 0.36 2 NC_035910.1 33412538 ~ 33508909 (+)