RNA id: TU211485


Basic Information

Item Value
RNA id TU211485
length 745
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G143155
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1877671 ~ 1883530 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taactagtgctgtcaattaTTTTATGCTGTGATTTTGATATGCTAAGTGTGTCAAAGTGGCATGTATAAGTGTGTGCGTACAGATGGACTCACTGTCTTTTGAGTCGTTTAGGGAGTCTTGTTTGACAGGGGTCGGATCGCTCCAGGATCGGTTGAAACTCTTCGTCCTGCGCTCTGCAAATGCTAGTGAAGTGGAAAGATggtcacacgcacacacacgcgaaGCCCCATGATCCTCACAGTGGGCTGCACTCAAACACACCAACAACCGCCAGCTACGCACACATCTCTCATATGCTTCCATGTCCATTTGTTCCTGTGCTCCACTTGAAAAACACATCGAAGCAAAACGGACCAACACTCGTCCGCAGTCATTGGTTTATAGGTCACAATGACGCAAAACTGTCAATCATCTTTcatacaaacatgcaaaaatacacATGCTAATCTACAGCACATGCATCACatgtacaaacaaaaacatacaaatggaGCTGTGCAATCGTTCATACTGTACACTCACACATAGACTCACTTTGTGCTTTCATTCTTCTGCTGCCCACCATTCTTAAATGCTTCCGGAAATTTCTAAACGCCTGCATGGTCGTTGTAGCAGTCTGAAAGCTGAACATGTTTTCTTTAGGTAACCAACTGTTATCTTCTGGTTAGAAAAAGACATAAGGGACTGCATTAGTAGAGCTGAAATGATGTATCTGAATATATGCATTGCGTCAAACTGACAATC

Function

GO:

id name namespace
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211472 lncRNA upstream 112576 1764761 ~ 1765095 (+) True G143144
TU211466 lncRNA upstream 113928 1763476 ~ 1763743 (+) True G143140
TU211465 lncRNA upstream 114834 1762382 ~ 1762837 (+) True G143139
TU211223 lncRNA upstream 630862 1241871 ~ 1246809 (+) True G142977
TU211158 lncRNA upstream 641516 1229548 ~ 1236155 (+) False G142943
XR_006247411.1 lncRNA downstream 98393 1981923 ~ 1984090 (+) True LOC122326018
TU211536 lncRNA downstream 168102 2051632 ~ 2056679 (+) False stxbp1a
TU211662 lncRNA downstream 188644 2072174 ~ 2072661 (+) True G143290
TU211689 lncRNA downstream 297542 2181072 ~ 2181602 (+) True G143315
TU211714 lncRNA downstream 451729 2335259 ~ 2335791 (+) True G143339
XM_043221412.1 mRNA upstream 28186 1830684 ~ 1849485 (+) True zgc:113162
XM_043221413.1 mRNA upstream 28186 1830684 ~ 1849485 (+) False zgc:113162
XM_043221411.1 mRNA upstream 47519 1809497 ~ 1830152 (+) False LOC122326489
XM_043221805.1 mRNA downstream 66206 1949736 ~ 1953226 (+) True LOC122326700
XM_043222176.1 mRNA downstream 112257 1995787 ~ 1999047 (+) True slc31a2
XM_043221760.1 mRNA downstream 146574 2030104 ~ 2056673 (+) True stxbp1a
XM_043222159.1 mRNA downstream 397051 2280581 ~ 2287288 (+) True LOC122326937
XM_043221537.1 mRNA downstream 734705 2618235 ~ 2627353 (+) True LOC122326565
TU211224 other upstream 648626 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 721529 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 721529 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 822324 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 350129 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1063322 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1432226 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1434705 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1731630 3615160 ~ 3615231 (+) True trnam-cau_115

Expression Profile