RNA id: TU211536


Basic Information

Item Value
RNA id TU211536
length 2225
lncRNA type sense_over
GC content 0.40
exon number 2
gene id stxbp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2030104 ~ 2056679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATTTAAGATTTTACATTAACACAGAATTTCTAATTGGTGGATTTGTGCAACCTGCACAATTTTGTCCAAGCATGAGGTCTATTAGAGATGAACAATGCATCAGAAGGACCTCTATGGAATTAATTTGCGGAATGACTTTTTTAAGTCGATTGAAGGAGGCCTGACATTTATTGAGTCTTCCATCACTGATTCGTCCAGCCAGAGCttccaaaaaaatcattttctttgtcGGGGTTCTAGGACGATATTTCTGAAACATCAAGATCTACAGATGGTGGAAATGGTTTTTAACCCTCTTTTGTCCCCATAAAGATTAACGGTGGTGAAAGAACGTGAGGTGCGGTGTGAGATTCATTCTGAGCGTGAAGCCACCTTTGTTCCTCCGCAGGTTCTACTCACACGCTCACCCCAACCAAATTTCTAATGGACCTGCATGCACCCGACTCCGAGAATCCACTAGGGTGTCCTTTGAGGACCCTGACCCCTCAGacgagtgagagagagaaagagaggaagggTGGGAGAGAGAAATCACACTCTGACAAAGTTCGACCCATATCACCGGCCCCACCCAGCTTCTGGACGCTCTCAAGGCCATGAACAAACCCGACGAGGAGCAGACAAGCTAAAATCACAACTTCCTCCTCCCCAACCCCATCGCCCAGTTACCCTCTCCCTCCCTTCATCCGTCGCCCTGTAAATCGCACCCGCTCCTATATAAATTGTGTATGCATCTTGcttgagagaaaaagaaaaaaaaaaaaaggtgattgGTGACAAGTTAAAAAGAATATtctataaatttatatatatttaaatatatatataatgttgaaataaaagaatCATTGCAAGTATTCTTCTGTTTTACAATGGATGCAAATGATTAGACTGTCAAACTGAGTTttcattttgccatttaaaaaccTGAAAGTACCAAATGTAATATTGTATGTTATGGAACCTGCTAGAATGCGTAAATGGTAGATCACTCTTTGCGTTTGTTCCTTATTTAActtggtgtgtgttttttcttttctttctgttatttGAATGGTTTAAAAGTGGTTGGGGGAGGGACTGGTTTGTATGCAAATAGACCAGTGAGGCAAAACGATGCATATCACTTCCTACGCTGAAGGCTAAGCTGCCGCCCAGTCGAGATGCTTGGGTTTAATTGTTGTCTCATTTTAGATGTGCATGCCATGGACGCTACTATGTGGCCATTTTGACATGTTTTCAAAcgcaagtaaaaaataaatacaaaaaacatgttaagaACGAAACAATGAGCATCTTCTGGGACTCCAGTGATGAAGAGGAAGGAGGCCAAAGGAGTAACAGATCAAAGCCTCAAGCCGTAAACGTGAAAGAGACACTGTACATAGATAGCGGACGTCACCCCTCCTTCAATCGCGATTCCCGGGAGCGTTTACTCTCCATCTCCTTTTCTTTTCACGTCTCCTTCTACAGAGACCTCATGATTTAGTGTGAAGAAGGCCGTTGCTTGCAGATGTTTAAGGAATTCAAAAAAAAGGGCCAGTTGTATTTCAGTATTGTATCTCGTCTTATCATTGGTTAGTAAACAATGTTTAACCGGGACATGCACTGAGTAGCGTGTTGTTGTATGCcatatgttactgttttttcGTCTCACTGTTGACTGGTGAAAATTTCTGACTGTGAAGTAGTAAAACTTTCCTTTGCCAATGTGAAGCCACTGTGTTTGTGACGTATTAGCTGTAGCTGTAGTGAtaaactggggaaaaaaaaaataataggtaAAATCTATCTTTCGTTTGTCCGTCCGATAGTTTCTTTCTGGTGCAATGTTATATCTTCCACTGGTGAATGGCTTTGCAACGAAACGCAACCCCCCTTTTTAATGTTTGGGTTTCAGTTTCCTCTTTACTCTGTTCTGGCAGAAAGGTTGTATATTGCACTACGCgttttctgtgatgcaaacGCTTCTATggttctctctcttcttttaaACGATTACCTTCATTTGGGTTTGCTGTTGTATAGCTGTGTCGACTGGATtgatttctattctatttatttttcagagaatATCAATAAATAAGAACGTAGTCTGTCTTAAACCTGTTGATCTTACTGGGATTCTATGTTTGCGAGTGTTGAAGCACAAACTAAAGTATACTTCATGTGTACCGATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAATATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247411.1 lncRNA upstream 67542 1981923 ~ 1984090 (+) True LOC122326018
TU211478 lncRNA upstream 88612 1839332 ~ 1963020 (+) True G143149
TU211483 lncRNA upstream 107129 1873761 ~ 1944503 (+) True G143153
TU211485 lncRNA upstream 168102 1877671 ~ 1883530 (+) True G143155
TU211472 lncRNA upstream 286537 1764761 ~ 1765095 (+) True G143144
TU211662 lncRNA downstream 15495 2072174 ~ 2072661 (+) True G143290
TU211689 lncRNA downstream 124393 2181072 ~ 2181602 (+) True G143315
TU211714 lncRNA downstream 278580 2335259 ~ 2335791 (+) True G143339
TU211715 lncRNA downstream 280102 2336781 ~ 2338470 (+) True G143340
TU211734 lncRNA downstream 342393 2399072 ~ 2400069 (+) True G143354
XM_043222176.1 mRNA upstream 52585 1995787 ~ 1999047 (+) True slc31a2
XM_043221805.1 mRNA upstream 98406 1949736 ~ 1953226 (+) True LOC122326700
XM_043221412.1 mRNA upstream 202147 1830684 ~ 1849485 (+) True zgc:113162
XM_043221413.1 mRNA upstream 202147 1830684 ~ 1849485 (+) False zgc:113162
XM_043221409.1 mRNA upstream 221480 1809900 ~ 1830152 (+) True LOC122326489
XM_043222159.1 mRNA downstream 223902 2280581 ~ 2287288 (+) True LOC122326937
XM_043221537.1 mRNA downstream 561556 2618235 ~ 2627353 (+) True LOC122326565
XM_043221535.1 mRNA downstream 563485 2620164 ~ 2627353 (+) False LOC122326565
XM_043221536.1 mRNA downstream 563485 2620164 ~ 2627353 (+) False LOC122326565
XM_043221533.1 mRNA downstream 574417 2631096 ~ 2656760 (+) True LOC122326563
TU211224 other upstream 822587 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 895490 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 895490 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 996285 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 176980 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 890173 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1259077 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1261556 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1558481 3615160 ~ 3615231 (+) True trnam-cau_115

Expression Profile