RNA id: XM_043221760.1


Basic Information

Item Value
RNA id XM_043221760.1
length 3612
RNA type mRNA
GC content 0.46
exon number 24
gene id stxbp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2030104 ~ 2056679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGTCACGGAGGGATTCACTTTCCGCGATTCAGTGCCTGCGCCCTCAGCCTCTGGCAGACGCGCTACGTTTAACGGCGCCCGGTGGCGCGAGCGCACGCGAGGGAGGGGCGGTTACGCAGTGACGAATCTCCGCAGTCAGCTGCTGTGAGTGCGCAGCACCGCTCTGCCAGAGACAGCaaagaggaggagagggaggAGAAGAAGATACAGCACACGGGCGAACACTCAGGAGCATCATGGCACCAATTGGATTAAAGGCGGTCGTTGGCGAAAAGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGAGAGTGGAAGGCTTTGATTGTGGACCAGCTCAGCATGAGGATGCTGTCCTCTTGCTGCAAAATGACTGATATCATGACAGAGGCATCACCAGTAATTGTTGAAGACATTAATAAGCGAAGAGAGCCTCTCCCGTCACTGGAGGCCATTTACCTGATCACCCCTACTGAGAAGTCCGTGCAGACTCTCGTCAATGACTTCAAAGATCCCCATTCAGCGAAATATAAAGCGGCTCATGTGTTCTTCACTGACTcttGCCCGGCCCTGTTTAATGATGTGGTGAAGAGCCGTGCCTCCAAAACCATTAAAACCCTAACTGAGATCAACATCGCCTTCCTGCCCTATGAGTCCCAGgTGTTCTCTTTGGACAACCCTGATGCCTTCCAGAGTTTCTACAGCCCTCataagacacagctgaagaacCCTGTGATGGAGCGGTTGGCAGAGCAGCTGGCAACGCTGTGTGCCACACTGAAGGAGTACCCTGCCGTCCGATACCGAGGTGAGTATAAAGATAACGCCACTCTGGCTCAGTTGCTTCAGGACAAACTGGACGCCTACAAGGCAGATGATCCCACAATGGGGGAGGGTCCAGACAAGGCTCGCTCTCAGCTCATTATTCTGGACCGAGGTTTCGACCCAGTCTCTCCTGTCCTGCACGAGCTCACCTTTCAGGCTATGGCCTATGACCTGCTGCCCATCGAGAACGATGTCTACAAGTCTGAGACCAGTGGAATAGGAGACTCTCGTGAGAAGGAAGTGCTGCTGCATGAAGACGATGACCTCTGGGTGGCACTACGGCACAAACATATTGCTGAGGTCTCACAGGAGGTGACACGTTCCCTGAAGGAGTTTTCTGCTAGTAAACGGATGAATACTGGAGAGAAGACCACCATGAGGGATCTGTCTCAAATGCTAAAGAAGATGCCGCAGTACCAGAAAGAGCTCAGCAAGTACTCAACCCATCTGCAGTTGGCCGAGGACTGCATGAAGCACTACCAGGGAACCGTGGACAAGCTGTGCCGTGTAGAACAGGATCTCGCTATGGGAACAGACGCTGAGGGCGAAAAGATTAAAGACCCCATGAGGGCCATCGTGCCAATCTTGCTGGATGCCAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTCTACATTTTCCTCAAGAACGGGATCACAGAGGAGAACCATAACAAGCTGATTCAACACGCCCAGATCCCTCCTGAGGACAGTGAGATCATCACCAATATGGCTCATCTGGGCGTCCCAATCATCACGGATTCTACTCTCCGCAGAGGCAAGAAGCTGGATCGTAAGGAGCGTGTGAGCGAGCAGACCTATCAGCTTTCTCGCTGGACCCCACTCATCAAGGACATCATAGAGGATGCTATCGATGACAAGCTGGACACCAAACATTATCCGTACATCTCAACACGCTCGTCCTCTTCCTTCAGCACTTCTGCAGTCAGTGCTCGATATGGCCACTGGCACAAGAACAAAACCCCTGGAGAGTACCGTACGGGCCCTCGCATCATGGTCTTCATTATTTTGGGCGCGTCCTTTAGCGAGATGCGCTGTGCCTATGAGGTCACACAGGCTAATGGCAAATGGGAGGCCATCATTGGTTCGACCCATATCACCGGCCCCACCCAGCTTCTGGACGCTCTCAAGGCCATGAACAAACCCGACGAGGAGCAGACAAGCTAAAATCACAACTTCCTCCTCCCCAACCCCATCGCCCAGTTACCCTCTCCCTCCCTTCATCCGTCGCCCTGTAAATCGCACCCGCTCCTATATAAATTGTGTATGCATCTTGcttgagagaaaaagaaaaaaaaaaaaaggtgattgGTGACAAGTTAAAAAGAATATtctataaatttatatatatttaaatatatatataatgttgaaataaaagaatCATTGCAAGTATTCTTCTGTTTTACAATGGATGCAAATGATTAGACTGTCAAACTGAGTTttcattttgccatttaaaaaccTGAAAGTACCAAATGTAATATTGTATGTTATGGAACCTGCTAGAATGCGTAAATGGTAGATCACTCTTTGCGTTTGTTCCTTATTTAActtggtgtgtgttttttcttttctttctgttatttGAATGGTTTAAAAGTGGTTGGGGGAGGGACTGGTTTGTATGCAAATAGACCAGTGAGGCAAAACGATGCATATCACTTCCTACGCTGAAGGCTAAGCTGCCGCCCAGTCGAGATGCTTGGGTTTAATTGTTGTCTCATTTTAGATGTGCATGCCATGGACGCTACTATGTGGCCATTTTGACATGTTTTCAAAcgcaagtaaaaaataaatacaaaaaacatgttaagaACGAAACAATGAGCATCTTCTGGGACTCCAGTGATGAAGAGGAAGGAGGCCAAAGGAGTAACAGATCAAAGCCTCAAGCCGTAAACGTGAAAGAGACACTGTACATAGATAGCGGACGTCACCCCTCCTTCAATCGCGATTCCCGGGAGCGTTTACTCTCCATCTCCTTTTCTTTTCACGTCTCCTTCTACAGAGACCTCATGATTTAGTGTGAAGAAGGCCGTTGCTTGCAGATGTTTAAGGAATTCAAAAAAAAGGGCCAGTTGTATTTCAGTATTGTATCTCGTCTTATCATTGGTTAGTAAACAATGTTTAACCGGGACATGCACTGAGTAGCGTGTTGTTGTATGCcatatgttactgttttttcGTCTCACTGTTGACTGGTGAAAATTTCTGACTGTGAAGTAGTAAAACTTTCCTTTGCCAATGTGAAGCCACTGTGTTTGTGACGTATTAGCTGTAGCTGTAGTGAtaaactggggaaaaaaaaaataataggtaAAATCTATCTTTCGTTTGTCCGTCCGATAGTTTCTTTCTGGTGCAATGTTATATCTTCCACTGGTGAATGGCTTTGCAACGAAACGCAACCCCCCTTTTTAATGTTTGGGTTTCAGTTTCCTCTTTACTCTGTTCTGGCAGAAAGGTTGTATATTGCACTACGCgttttctgtgatgcaaacGCTTCTATggttctctctcttcttttaaACGATTACCTTCATTTGGGTTTGCTGTTGTATAGCTGTGTCGACTGGATtgatttctattctatttatttttcagagaatATCAATAAATAAGAACGTAGTCTGTCTTAAACCTGTTGATCTTACTGGGATTCTATGTTTGCGAGTGTTGAAGCACAAACTAAAGTATACTTCATGTGTACCGATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAA

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247411.1 lncRNA upstream 46014 1981923 ~ 1984090 (+) True LOC122326018
TU211478 lncRNA upstream 67084 1839332 ~ 1963020 (+) True G143149
TU211483 lncRNA upstream 85601 1873761 ~ 1944503 (+) True G143153
TU211485 lncRNA upstream 146574 1877671 ~ 1883530 (+) True G143155
TU211472 lncRNA upstream 265009 1764761 ~ 1765095 (+) True G143144
TU211662 lncRNA downstream 15501 2072174 ~ 2072661 (+) True G143290
TU211689 lncRNA downstream 124399 2181072 ~ 2181602 (+) True G143315
TU211714 lncRNA downstream 278586 2335259 ~ 2335791 (+) True G143339
TU211715 lncRNA downstream 280108 2336781 ~ 2338470 (+) True G143340
TU211734 lncRNA downstream 342399 2399072 ~ 2400069 (+) True G143354
XM_043222176.1 mRNA upstream 31057 1995787 ~ 1999047 (+) True slc31a2
XM_043221805.1 mRNA upstream 76878 1949736 ~ 1953226 (+) True LOC122326700
XM_043221412.1 mRNA upstream 180619 1830684 ~ 1849485 (+) True zgc:113162
XM_043221413.1 mRNA upstream 180619 1830684 ~ 1849485 (+) False zgc:113162
XM_043221409.1 mRNA upstream 199952 1809900 ~ 1830152 (+) True LOC122326489
XM_043222159.1 mRNA downstream 223908 2280581 ~ 2287288 (+) True LOC122326937
XM_043221537.1 mRNA downstream 561562 2618235 ~ 2627353 (+) True LOC122326565
XM_043221535.1 mRNA downstream 563491 2620164 ~ 2627353 (+) False LOC122326565
XM_043221536.1 mRNA downstream 563491 2620164 ~ 2627353 (+) False LOC122326565
XM_043221533.1 mRNA downstream 574423 2631096 ~ 2656760 (+) True LOC122326563
TU211224 other upstream 801059 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 873962 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 873962 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 974757 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 176986 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 890179 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1259083 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1261562 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1558487 3615160 ~ 3615231 (+) True trnam-cau_115

Expression Profile