RNA id: TU211695


Basic Information

Item Value
RNA id TU211695
length 3499
RNA type TUCP
GC content 0.41
exon number 2
gene id G143321
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2233659 ~ 2237195 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATAAGACATAAGCGTCAATGAGCAGAAATATATGGCATCTTATATCGATCATCAGATCACAGGAGTGAGGCAGTCGTCCTTGTGCATCATTTTCAACAACTCCTTTACAACAAACCGAGAAGTGAAGGGTCTTCTAATTTTCTCCCAGAAATCCAGGGCTAAGTGTATCAAAgattgtttctaaaaaaaaaataatcaacagCCAATTAACTCCTCACAGAAAAAACATGGATGAAGGTATACGATTTCCTACATGCACATACGTATGTCATCATAACATGCAAACATGACATCATCCAAAGAGATTAGCCACAGGTCAGTTGGACAAACTATacagcacacagacacaaactaGTGCTGTAATAAATTTGGCAcctggcatatatatatatatatgtatattttttccgtttttattatttttatttaaagaggaAAGGTGATGTCTAAATAAAGGGAAGTCAAAGCTCTATTAGGGTCACAACACTCCTCTCTATCCCAAAATGGAAATAGTGGCCAAAGGTACTGTAGTTCACTAGGACAtcacatactgtaaaaaaaaaaaataaagaaatcaaacGTCTTTACATTAACCTTTCTTTTAGCGACAGGTTGCGTGACGAAACATCAATTCCCCACCTATAGTGCAACCAGTACAAATACCATTACATTAACTGTTATACTTTCAGGGGGCACATCAATATTATATCAAGCACAATCAGCAATGCATCTGCGTTAAAATCTGGAATTTTTAGGTGAGCTACACATCCCGTATATATAAAGATCTCTGTGAAGCGTTGAATTGGTCCCATTTGTGCTAAAGCTAGATTGTGTTGAGTGCAGGTAAAGCTACAGGATGAGGAGCGCTCCCAAAGTGTCGCTTTGTTGCATAGCCCTACTGTACTGTACAGTCAACATTTCCCTGCATTTAGATATGATAAAGCGCAACAGTTAACAATTCCATTCATTATCGCCACAGCCACTGTTgagatttttaaagcaaaaaatcaCGAAAATTGCCAATCACCAAAatgtttcaggttttttttccagcagctTTTTATACCACGAAACAGaaagttgtatttttgtatacagTGTTGCTTGAAATTCCCATGAAGACAATGAATGGTAAAACACTTCCAGAACCACAACCGCTGAAAACGCAGACAGCCACTGTTGCGCTCTATTGCAGGCTCACCCTAAAAATACCACCATGTAAATAAACTCTTCAGATAGAAAAGACACAGCCGAAGTCGACAAACTGAAGACATGGGCAGGATCAGAGTATTATTCATATTCTGAATAAATGAACCTTTGTTAACTCtcatcaaaaacattacaatatatcACTAATTGAGAAGTGAAAACAACATATTCtctattttatatagttttcacTGAATCTTTTTGTGTGGTGAATAACAGATACTATAAAATTTCTACAAAGCGCTTTAAACCGTCTCACCCTCTTCCTCAATTATTGAAAGAGAAAGATATGAGCTCATTATGTGCCCTCTGGAAACAACACTGACATCAACAGCAACCAACAAATACAACCTTTCAATCTTCTATTACCCAACtgcattcgttttttttatatatcatctATTTTCCCCTGAATCGTTTCAATAACACACTCAGAAAAGACCGACATCATCAACATCCACCTAAAGTTTACAACGCTACAGTCTTAGTATTGTGCAATCTCGTTCCTCAAACACATGCTCAAGTACATCTAAGAAACAAATATCAGTGACATATAACCTATAGCGTATAGCATCTATTCATTGCCCTTTTTAGGCCAAATGCTTCATAATGCATCACGCACCAATGTGGCAATAAAATCTCAAAGTTTAGGCACTTGGTATCTTACCTCTCGAGAGTAAGAAAAGGATTAGACCTTACGTAATGTCCAGCTACACTCGGATCATTTACAAGGTACAAAATGGAACACTGTGAAAAGATTTTCAATCTACTGCAGTCTGATAGAAAAGTGAGTTCAATTTGGCCTTCTTTTTCAGTAGGTGGGAGCAGATCGTCTGTTCCACGCACGCTAGAGAATGAAGTAGAATACAGCAGCGCAAACTTTAAGGTTGTGTGTCCACCAAAGAGTTTTTTAGCGCCCCAAAAATGCCAGCAACTCTTCTGAAATTGCCCCGTTGTGGGCACTTGAGAGCGCTTTGGTGGCGCTTACCTGGTAAAACTATGATGATTGAAATATCATTCGAATATCAATTCAATAATTTTACAAGTAGAATGTGATGGTTGGTTGGTGTGGTATCCTCTAATGCAAATGGATGGACAAGGTAAAAGTAACAGTTACGTGTGCTACATTTCACCAAGAAATCAACACTGTTTAACTCCCAACTATCAATAACACTCTTGGAACAGATGCTTGCTGCCACGCCACACTAAAACATTATGCTCCCACTGGAAACAATTGAAATTTTATGCTGTATTCAGAAACAAATTAAACGTTTTGGTGAACACACTGCCAAAACCCCTAGAAATAACTTTTCAGTCATTGTGTCCTGTGCAAAGAGTCTAAAGAAGCTCTCAAATCTTAGCAAATAATGGTCTCACATTTTCCACCATAGCTTGTGTTTTAAGGGCATTTTCCTCTCTGAGGTCTGCGGTTTCGATCACAGGCACAGCTGATGTGACCATCTCCCTGCATGTGACCCTTGTAGAATCAGCCCTAATGAAAAATTAAGAGAAGTGGGGAGCGCCACTTGAGGCTAAACTCTTCAGTTCGAAACCTATCCAGACCTCCAAGTGCTTTCCTATTAACCGCAACTTTCGTAAACAGTAACAAGGATGTCTGATACTTTCTGAAACAAGAGAAAACACCTTTATAAAACCATATAGGCTCAAGCTGATGGTAAACAGTTGTAATAGTGTAAACTGCAACTCTTGTTTGCCTTCAAAATTAGCGGCTCCTGTAAGGGCGAAGATGATAAAAAATCATGCTAGACTGAATCATGCTAACACCAGTCATCTCTCTCAGTCTCCTGGTAGCTTCCAGATGCTCTACCGCTCGACCCAGGTGCCGCGTTCACTCCGAGGGAGTAGTGATACCCGTTGGGGACTCCGCTCTGGCTGCGGGAGAGCAGCGTGGAAGTTGGGGCTGCACCTGATGAAGTGTGAGCGATGGAGGCTGCAGTCCTGGGAGAGCGGCCCGTGCCGTACGTGCTCAAGGCATCGTGGAAGTCGTCCGATTCAGACAAGTGCGAGTCTTGCTGGAGGGGACCTAAATTGGCGGTGGGTGCTACCGCTGAGTAGGGTATCGTGCTCTGACAGGCCACGACTAAGGCGAGTGGGGCAGGGCCCTGTAGACTGGGCAGTGTTGAGCTGGACCGGAGAGGAGTTGGCAGTCTTGTAGGCAACAGCAGGCCGAGGGGTAAGGGGCGTTTGTGGGAGCTGTCTACGCCCGCGGCAGGGTGTGCTGGTGCCTGAGGTATGAACGACTGAAGTTCCTTTAGCTGTGTTAACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211689 lncRNA upstream 52057 2181072 ~ 2181602 (+) True G143315
TU211662 lncRNA upstream 160998 2072174 ~ 2072661 (+) True G143290
TU211536 lncRNA upstream 176980 2051632 ~ 2056679 (+) False stxbp1a
XR_006247411.1 lncRNA upstream 249569 1981923 ~ 1984090 (+) True LOC122326018
TU211478 lncRNA upstream 270639 1839332 ~ 1963020 (+) True G143149
TU211714 lncRNA downstream 98064 2335259 ~ 2335791 (+) True G143339
TU211715 lncRNA downstream 99586 2336781 ~ 2338470 (+) True G143340
TU211734 lncRNA downstream 161877 2399072 ~ 2400069 (+) True G143354
TU211736 lncRNA downstream 165552 2402747 ~ 2404090 (+) True G143356
TU211725 lncRNA downstream 189294 2426489 ~ 2490200 (+) True G143349
XM_043221760.1 mRNA upstream 176986 2030104 ~ 2056673 (+) True stxbp1a
XM_043222176.1 mRNA upstream 234612 1995787 ~ 1999047 (+) True slc31a2
XM_043221805.1 mRNA upstream 280433 1949736 ~ 1953226 (+) True LOC122326700
XM_043221412.1 mRNA upstream 384174 1830684 ~ 1849485 (+) True zgc:113162
XM_043221413.1 mRNA upstream 384174 1830684 ~ 1849485 (+) False zgc:113162
XM_043222159.1 mRNA downstream 43386 2280581 ~ 2287288 (+) True LOC122326937
XM_043221537.1 mRNA downstream 381040 2618235 ~ 2627353 (+) True LOC122326565
XM_043221535.1 mRNA downstream 382969 2620164 ~ 2627353 (+) False LOC122326565
XM_043221536.1 mRNA downstream 382969 2620164 ~ 2627353 (+) False LOC122326565
XM_043221533.1 mRNA downstream 393901 2631096 ~ 2656760 (+) True LOC122326563
TU211224 other upstream 1004614 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1077517 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1077517 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1178312 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 709657 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1078561 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1081040 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1377965 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 1464234 3701429 ~ 3704397 (+) False G143650

Expression Profile