RNA id: TU211714


Basic Information

Item Value
RNA id TU211714
length 533
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G143339
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2335259 ~ 2335791 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGtttccaaatacattttatggcgTTTAGGTTTATTTCTCCTGTTGAACGTTTAGGCCCCCTAGTGGCTAacagaattaattaaaaacgaTCAATTGTAATTTTCTGTGTAAAGTACTCACTATTGACCTTTAACCGCATTGAGCGTTAAATTTACAGCAGACCCTGATGAAGAAGTTAATAAGCTTCAGTGTGGGTTACATTACAAATGACTTTCATTCCCTGCCGCTCACCTCTCCTCCCATGGACACATTTCATGGGTGCTGATGACATCCATGTTCCTCAGCTTTCTGGGTCTCTCCAGCTCTACCACGGTGTCATATCTGCTGCATTCTGCAGTATTCTGGTCATCTCCCGCTGCCTGCATCTCTTTGCTGGACAGTTCTGTAAAAGCTGCTCTTCTGTCCCTCTTATTCTCAGGTGGCTCAGGAGACTGAGCCCAGGAACTGAACTCTGTGCCCAGAGTTAACATCCGCCATGTTCCCAGTGTGGCCAGTCGGGCGGCTTTATTTTTGATACGAGAGATGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211689 lncRNA upstream 153657 2181072 ~ 2181602 (+) True G143315
TU211662 lncRNA upstream 262598 2072174 ~ 2072661 (+) True G143290
TU211536 lncRNA upstream 278580 2051632 ~ 2056679 (+) False stxbp1a
XR_006247411.1 lncRNA upstream 351169 1981923 ~ 1984090 (+) True LOC122326018
TU211483 lncRNA upstream 390756 1873761 ~ 1944503 (+) True G143153
TU211715 lncRNA downstream 990 2336781 ~ 2338470 (+) True G143340
TU211734 lncRNA downstream 63281 2399072 ~ 2400069 (+) True G143354
TU211736 lncRNA downstream 66956 2402747 ~ 2404090 (+) True G143356
TU211725 lncRNA downstream 90698 2426489 ~ 2490200 (+) True G143349
TU211774 lncRNA downstream 151612 2487403 ~ 2543307 (+) True G143385
XM_043222159.1 mRNA upstream 47971 2280581 ~ 2287288 (+) True LOC122326937
XM_043221760.1 mRNA upstream 278586 2030104 ~ 2056673 (+) True stxbp1a
XM_043222176.1 mRNA upstream 336212 1995787 ~ 1999047 (+) True slc31a2
XM_043221805.1 mRNA upstream 382033 1949736 ~ 1953226 (+) True LOC122326700
XM_043221412.1 mRNA upstream 485774 1830684 ~ 1849485 (+) True zgc:113162
XM_043221537.1 mRNA downstream 282444 2618235 ~ 2627353 (+) True LOC122326565
XM_043221535.1 mRNA downstream 284373 2620164 ~ 2627353 (+) False LOC122326565
XM_043221536.1 mRNA downstream 284373 2620164 ~ 2627353 (+) False LOC122326565
XM_043221533.1 mRNA downstream 295305 2631096 ~ 2656760 (+) True LOC122326563
XM_043221534.1 mRNA downstream 295305 2631096 ~ 2654902 (+) False LOC122326563
TU211695 other upstream 98064 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1106214 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1179117 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1179117 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1279912 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 611061 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 979965 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 982444 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1279369 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 1365638 3701429 ~ 3704397 (+) False G143650

Expression Profile