RNA id: TCONS_00009917


Basic Information

Item Value
RNA id TCONS_00009917
length 614
RNA type nonsense_mediated_decay
GC content 0.43
exon number 7
gene id XLOC_005113
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4294923 ~ 4301376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACACAAAGCTGGTTTTGACTTTGTTAAGGAGAGGAAATTAGGTGTGATCGTTAAAAACTGAAAAGGTTTAAGCATTAAAAATGATGACTGTAATCCTAACCTGTCTTGCAACTTATTTCCTGCACATGGTGTGCAGTGTTTCAGGCTCCATTTCATGGTGCTATCACAGTCCATCATGCACATTCTGCTCCATGGCATGCTAGGCTATTagttaattgagGTGAAGTCACATGGCCCATCATTGCAGAAAAACACTGTAACGGCACTCAACAATCTCCAATAAACATCGTAACCGCTAATGTCAAGGCTAATGCTAATTTGACCTCTTTCACATACGTTGGCTACAATGACAGCACTGCTTTAACTGTGATTAAAAACACTGGCACAAGTATTCAAGTTACGTTGGATCCGAAGAAGATGCGTGTGGCAGGGGGTAATCTGCCAGGCCGGTTTGCCAGCACTGAGTTTCATCTTCACTGGGGAAATGGCAGTGCCATGCCTGGGTCTGAACACACTGTGAATGGAAAACGATTCCCAATGGAGTTGCATATTGTGAACAAGCCTGTCAGTAACACCAGTGATTCGTTGGCAGTTCTTGGTGTCTTCATTGAG

Function

GO:

id name namespace
GO:0051453 regulation of intracellular pH biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0008354 germ cell migration biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2222 Predicted to enable carbonate dehydratase activity. Acts upstream of or within germ cell migration and regulation of intracellular pH. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including blastomere; germ line cell; heart; margin; and ovary.

Ensembl:

ensembl_id ENSDART00000152557

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011076 lncRNA downstream 11193 4274910 ~ 4287034 (-) True XLOC_005111
TCONS_00011075 lncRNA downstream 65722 4231857 ~ 4232505 (-) True XLOC_005109
TCONS_00010795 lncRNA downstream 103923 4190022 ~ 4194304 (-) True XLOC_005105
TCONS_00011074 lncRNA downstream 128528 4143594 ~ 4169699 (-) True XLOC_005103
TCONS_00011073 lncRNA downstream 168407 4089737 ~ 4129820 (-) True XLOC_005102
TCONS_00009932 lncRNA upstream 299973 4601349 ~ 4609507 (-) True XLOC_005124
TCONS_00011077 lncRNA upstream 375810 4677186 ~ 4683350 (-) False XLOC_005126
TCONS_00010796 lncRNA upstream 515913 4817289 ~ 4817860 (-) True XLOC_005128
TCONS_00011078 lncRNA upstream 568625 4870001 ~ 4871916 (-) True XLOC_005131
TCONS_00011079 lncRNA upstream 570665 4872041 ~ 4874669 (-) True XLOC_005132
TCONS_00009911 mRNA downstream 49227 4241467 ~ 4249000 (-) True XLOC_005110
TCONS_00009910 mRNA downstream 54959 4241458 ~ 4243268 (-) False XLOC_005110
TCONS_00009909 mRNA downstream 77514 4217178 ~ 4220713 (-) True XLOC_005108
TCONS_00009908 mRNA downstream 91358 4201826 ~ 4206869 (-) True XLOC_005107
TCONS_00009907 mRNA downstream 98499 4196493 ~ 4199728 (-) True XLOC_005106
TCONS_00009918 mRNA upstream 7146 4308522 ~ 4317165 (-) True XLOC_005114
TCONS_00009919 mRNA upstream 18665 4320041 ~ 4331117 (-) True XLOC_005115
TCONS_00009920 mRNA upstream 36922 4338298 ~ 4346085 (-) True XLOC_005116
TCONS_00009921 mRNA upstream 59441 4360817 ~ 4370585 (-) True XLOC_005117
TCONS_00009922 mRNA upstream 76248 4377624 ~ 4388704 (-) True XLOC_005118
TCONS_00009912 other downstream 11747 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009859 other downstream 2807639 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 3675938 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009948 other upstream 1098304 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009972 other upstream 2922413 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009977 other upstream 3201586 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009989 other upstream 4142528 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 4558817 8860193 ~ 8860307 (-) True XLOC_005180

Expression Profile

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