RNA id: XM_043221449.1


Basic Information

Item Value
RNA id XM_043221449.1
length 650
RNA type mRNA
GC content 0.43
exon number 4
gene id gnrh2
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2829114 ~ 2830356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGACGTATCTCAGAAGCTCACTGAAGCGTTCGCAAGGCAAAGGAGACCATATCAGGATTACCAAGACCAGGACTTCAGAGTAGAGAAACTACTAAAGAAGATCCTTCAAGAGGAGACGTGCCAGTAGATACAAGTTATGGTGCACATCTGCAGGCTGTTTGTGGTGATGGGGATGTTGCTGTGTCTAAGTGCCCAGTTTGCCAGCTCTCAGCACTGGTCTCACGGCTGGTATCCCGGAGGAAAGCGAGAGATAGACGTTTACGATACCTCAGAGGTTTCAGAGGAAATTAAACTCTGCGAGGCAGGAAAGTGCAGCTACCTGAGACCCAAGGGAAGAAACATTCTCAAGACAATACtgCTGGATGCCCTCATACGGGATTTCCAAAAGAGAAAGTGACACCAAGATGACTCAACAGCCTGTGTCCAAAGAAAAAACCTTTTCCAGCAAACACATTCGGCCTGCATTTCCatctaaattattatatatatatataattattttgttattctgtgattttattttttacttttttgtacgTTCTGCATTGTGTTCTGTTCTCATAACCGATGTGAGTGAACCTTTACTGCCGGCACTATGTAACCATTTGCAGCAGTTCATACAATAAAGgctttattttggtattttg

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211921 lncRNA upstream 27766 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 285807 2487403 ~ 2543307 (+) True G143385
TU211725 lncRNA upstream 338914 2426489 ~ 2490200 (+) True G143349
TU211736 lncRNA upstream 425024 2402747 ~ 2404090 (+) True G143356
TU211734 lncRNA upstream 429045 2399072 ~ 2400069 (+) True G143354
TU211960 lncRNA downstream 32416 2862772 ~ 2863017 (+) True G143491
TU211980 lncRNA downstream 99906 2930262 ~ 2937617 (+) True G143509
TU212075 lncRNA downstream 484821 3315177 ~ 3315473 (+) True G143578
XR_006247518.1 lncRNA downstream 505905 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 658155 3488511 ~ 3492565 (+) False G143590
XM_043221448.1 mRNA upstream 2205 2802146 ~ 2826909 (+) True ptpra
XM_043220866.1 mRNA upstream 28614 2793688 ~ 2800500 (+) False idh3b
XM_043220865.1 mRNA upstream 29247 2793688 ~ 2799867 (+) True idh3b
XM_043220864.1 mRNA upstream 35569 2789508 ~ 2793545 (+) True p2rx4a
XM_043221727.1 mRNA downstream 1395 2831751 ~ 2837249 (+) True gcnt4b.2
XM_043221728.1 mRNA downstream 1947 2832303 ~ 2837249 (+) False gcnt4b.2
XM_043221726.1 mRNA downstream 1948 2832304 ~ 2837249 (+) False gcnt4b.2
XM_043220871.1 mRNA downstream 12349 2842705 ~ 2845216 (+) True LOC122326157
XM_043220872.1 mRNA downstream 12349 2842705 ~ 2845216 (+) False LOC122326157
TU211695 other upstream 591919 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1600069 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1672972 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1672972 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1773767 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 116496 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 485400 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 487879 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 784804 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 871073 3701429 ~ 3704397 (+) False G143650