RNA id: TU212075


Basic Information

Item Value
RNA id TU212075
length 297
lncRNA type intronic
GC content 0.31
exon number 1
gene id G143578
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3315177 ~ 3315473 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGTTTCAAATTGCAGATTCTGTCATTTCTGGTTCAGTGGTCACACTGCGAGCGTGATAAATTATGGGATATGGTATTAAACTCATTTTGTAGTCTTGGGCGTTGCATGTATCAGGCTTATCATTGTGgagtaaaattaaaactaaccAGATAGTtgcaatgaaaacatttcttattttcttagtTTAATATGAAGCTTAGATATTTTTACTTGGTGTaactataaaaattacatttattataaaacattttctgacttTAAGATTTTAGCtggttttacatgttttttccAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211980 lncRNA upstream 377560 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 452160 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 484821 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 513829 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 771870 2487403 ~ 2543307 (+) True G143385
XR_006247518.1 lncRNA downstream 20788 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 173038 3488511 ~ 3492565 (+) False G143590
TU212097 lncRNA downstream 173038 3488511 ~ 3492587 (+) True G143590
TU212099 lncRNA downstream 173038 3488511 ~ 3492565 (+) False G143590
TU212176 lncRNA downstream 293446 3608919 ~ 3610050 (+) True G143638
XM_043221981.1 mRNA upstream 21169 3291697 ~ 3294008 (+) True LOC122326816
XM_043221157.1 mRNA upstream 339126 2966166 ~ 2976051 (+) True LOC122326343
XM_043221156.1 mRNA upstream 350501 2957186 ~ 2964676 (+) True LOC122326342
XM_043221159.1 mRNA upstream 358597 2954779 ~ 2956580 (+) True LOC122326345
XM_043222161.1 mRNA upstream 453827 2845780 ~ 2861350 (+) True fam169ab
XM_043221929.1 mRNA downstream 11027 3326500 ~ 3329805 (+) True LOC122326784
XM_043222180.1 mRNA downstream 21512 3336985 ~ 3338965 (+) True LOC122326952
XM_043220834.1 mRNA downstream 160510 3475983 ~ 3480494 (+) True LOC122326141
XM_043221150.1 mRNA downstream 178511 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA downstream 178520 3493993 ~ 3497228 (+) True LOC122326336
unassigned_transcript_2518 other upstream 368254 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1077982 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2086132 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 2159035 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 2159035 1153109 ~ 1156142 (+) False glrx
TU212076 other downstream 283 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 2762 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 299687 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 385956 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 385956 3701429 ~ 3704397 (+) False G143650

Expression Profile