RNA id: TU212079


Basic Information

Item Value
RNA id TU212079
length 580
RNA type TUCP
GC content 0.56
exon number 4
gene id LOC122326950
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3297990 ~ 3320013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTGTCTGCACTGGGCGTCGTTCGCGGGCAGCGCTGAGATAGCGGAGCTGGTCTTGAACGCCGGCTGTCCTCTGTCGACTGTTAACCTGCACGGAGACACGCCGCTGCACATCGCCGCCCGCGAGGGCTTCATCGACTGCGTCACGCTGTTTCTTTCTCGGGGCGCTGACATTGACATTATGAATAAGGAGGGCGACACACCGCTCTCCCTCGCCCGCTGTGACACGCCCGTCTGGGTGGCGCTACAGATTAACAGGAAGTTGCGTAGAGGAATCGCCAATCGTGTTGTACGGACCGAGAGGATCATATGCAGtgACGTGGCTCAGGGTTATGAGAATGTTCCCATCCCGTGTGTTAACGGCGTGGACGATGAAGGCTGTCCGTCTGACTACAAATACATCGCAGAGAACTGTGAAACATCCACCATGAACATCGACCGCAACATAACACACCTGCAGCACTGCAGCTGTACAGACGACTGCTCCTCCAGTAACTGTCTCTGCGGTCAGCTCAGCATCCGCTGCTGGTACGACAAGGTAAAATACTGCTCCGTCTCCACGATGAGCTCTGAAGTCNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212075 lncRNA upstream 2762 3315177 ~ 3315473 (+) True G143578
TU211980 lncRNA upstream 380618 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 455218 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 487879 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 516887 2800730 ~ 2801348 (+) True G143465
XR_006247518.1 lncRNA downstream 16382 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 168632 3488511 ~ 3492565 (+) False G143590
TU212097 lncRNA downstream 168632 3488511 ~ 3492587 (+) True G143590
TU212099 lncRNA downstream 168632 3488511 ~ 3492565 (+) False G143590
TU212176 lncRNA downstream 289040 3608919 ~ 3610050 (+) True G143638
XM_043221981.1 mRNA upstream 24227 3291697 ~ 3294008 (+) True LOC122326816
XM_043221157.1 mRNA upstream 342184 2966166 ~ 2976051 (+) True LOC122326343
XM_043221156.1 mRNA upstream 353559 2957186 ~ 2964676 (+) True LOC122326342
XM_043221159.1 mRNA upstream 361655 2954779 ~ 2956580 (+) True LOC122326345
XM_043222160.1 mRNA upstream 456885 2846213 ~ 2861350 (+) False fam169ab
XM_043221929.1 mRNA downstream 6621 3326500 ~ 3329805 (+) True LOC122326784
XM_043222180.1 mRNA downstream 17106 3336985 ~ 3338965 (+) True LOC122326952
XM_043220834.1 mRNA downstream 156104 3475983 ~ 3480494 (+) True LOC122326141
XM_043221150.1 mRNA downstream 174105 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA downstream 174114 3493993 ~ 3497228 (+) True LOC122326336
TU212076 other upstream 340 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 371312 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1081040 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2089190 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 2162093 1153109 ~ 1156142 (+) False glrx
unassigned_transcript_2519 other downstream 295281 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 381550 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 381550 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 381550 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 786922 4106801 ~ 4113733 (+) False G143725

Expression Profile