RNA id: TU212099


Basic Information

Item Value
RNA id TU212099
length 571
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G143590
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3488511 ~ 3492587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TactgttagggttatgtattgacattttgcaactttgatccttcagttacagcttccatcgggtgccaggctttgtcagcctgatgagaacggaatgttggagttaaatgttgacagttatgcacctgtggccttttagtttcagtttgattcttggtcataacatggcctccgtagaatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcctttcctctataaataaagtgacttgcgatctgagcgtcggaggaggcaaagcaggaggaggcaaagcaggaggaggcaaagcaggaggaggcaaagcagggaaggaggcagaaggcaggggcctgcccggcccccggcctcaggcggactgagatccgtctggagacaaaagggaggttaaggagaaacctgcttctctcccgcttgcattCGACAGCgcaatctttgcaagccttaaaatccaaaaacttgtcttgtgttttatttcgctttgagttgatccttcctggtaaagagccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247518.1 lncRNA upstream 151822 3336261 ~ 3336689 (+) True LOC122326852
TU212075 lncRNA upstream 173038 3315177 ~ 3315473 (+) True G143578
TU211980 lncRNA upstream 550894 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 625494 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 658155 2829114 ~ 2830356 (+) False gnrh2
TU212176 lncRNA downstream 116354 3608919 ~ 3610050 (+) True G143638
TU212203 lncRNA downstream 259034 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 270767 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 310893 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 427168 3919733 ~ 3921719 (+) True LOC122326258
XM_043220834.1 mRNA upstream 8017 3475983 ~ 3480494 (+) True LOC122326141
XM_043222180.1 mRNA upstream 149546 3336985 ~ 3338965 (+) True LOC122326952
XM_043221929.1 mRNA upstream 158706 3326500 ~ 3329805 (+) True LOC122326784
XM_043222177.1 mRNA upstream 168498 3297990 ~ 3320013 (+) True LOC122326950
XM_043221981.1 mRNA upstream 194503 3291697 ~ 3294008 (+) True LOC122326816
XM_043221150.1 mRNA downstream 1419 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA downstream 1428 3493993 ~ 3497228 (+) True LOC122326336
XM_043221148.1 mRNA downstream 7080 3499645 ~ 3502742 (+) True gpn3
XM_043221151.1 mRNA downstream 10657 3503222 ~ 3505587 (+) True arpc3
XM_043221006.1 mRNA downstream 21468 3514033 ~ 3542738 (+) True atp2a2b
TU212079 other upstream 168632 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 170616 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 541588 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1251316 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2259466 1228013 ~ 1229045 (+) False LOC122326311
unassigned_transcript_2519 other downstream 122595 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 208864 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 208864 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 208864 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 614236 4106801 ~ 4113733 (+) False G143725

Expression Profile