RNA id: TU212193


Basic Information

Item Value
RNA id TU212193
length 2652
RNA type TUCP
GC content 0.42
exon number 3
gene id G143650
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3701429 ~ 3704397 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAgcacatttataaaagtaattctCCTTGCTTAAAGACCACCCTCCCCCGCACATCCAGCGGTTTTAAGAGTTTTCAAGAAGTTAAGCACACCGGGGTGGGGGGGCACGAACGAAAATCATCTGGAGTTACGAGAATCATTACTTCACAAATCATTATTCTCAATATACAGCTTCACCAGAAAGAATGACAAGATATTTCAACGGCTTTATACAGAGTTATTGCACAATGCCTGGGCGAACACTTTGCGCGCCGTCTCCTTTCAGACGCCTTATTGATCGCACGTGATCTGAAACGAGGACTTGGCGTTTTCCCGTCGACATCAAAGTGACACTGCTGGCAGTTGCGCGGGAATATAGAAACgaaaaaagcagcacaaaaaTAATCGATTGATAATCGATTAATAATCCATCTCGTCCGATCCACCTGTTCAGGCGTAGCACTCCGCGCCATTCAACTGTTTGTCAAACAGAAAGGCGACGCTTCTTCATTTAAAGTTGCTTTTTTCAGTCTGTAGACGTGTCGGGTTTTAATGTGCTGCTCAAGTCAGTCTCACCTGTTAACTTAAGGCTTGGAAATATgatacaaaaagagaaaaatcgaGATCTGTCTTTcgacataaaacaaaatattcttaTTTACACCTCTTTTCCTTTGTACATTTTAGAGGGTCACTACAAAGCCCGCGATTTATGACCTGGATTTCATCTCAggataattaaatatgaatctaCCATTTAAATATTCTTTGCGTCAGGGGATGCACCAACAATTAACAACCGTAATATCGactagttaaaataataataataataataataataatttgcaaaaCGAAATGTCCCTGTAGAATCAAGTCCCGTTATTAGTGCGTTCAGTATATAAcggtctgtgtttgtttcctccagatttaacatttaaggtaaataaaaaatataaacataagttacaaaaaaagataagtaaaataaatatttaaataaagtttaaaaatgtctctAATCACTTTTGCGTCCGTTTGTTTTTGTGGCTTCGTAAAATTTCTCGAATATTTTGTCACcagaaaaacaaatttttgtttttttttttttttttttttttttttttttttgtgatggtgGAGTTCAAAGCTGCCATGTACTGCAAACGAGTCCGAATCGCGCCGTTCATCGCGGTGGTGTCGGTCTGGGTAACACACCGGAGAGGGGGGGCAGAGGCGGCGGCGGCTCGTTGGCGCCCTGGAGACCGTGCAGAAGAATCCGGGGAACGAGAGGACGCTGCAGCGCCGGCGGGGGCGCCGAAGGTCCCCTGTATAAGTAGAGCGCCGCTCCGGGGTCCAGGTTCGACACCAGGCTTTGAGGGTAGAAATACGGCGAAGGGAACATCCTTTGCAGCGCGGAATAGTTTCCAGCCTCCGCTAACAATTCCAGTCCGACCGCCGTTTGCCTCTTCCACTtggtcctttttttttccccccaagaCGAAAAAGAATGATGttagtatataaaaattaaaattgcaattattcTACGACTAGTGTTTTATGTTCTGATcgtaaaagcaaaaagaaaaaaaaaaatcatctagtGTGTGTGCTGTCTAACATGCTTATTCCCAAGCGAAAGAGTTCAGAGAAATAACAACTCAATCCTCCGTTACTTTGCCTtctgtttataattatttgcataaaaatcattttttaaccCCACAATGTGGTTTACGTTAAGATGGGACATCGTTAGAGCTTTGTCACTTTATAATTAAAGATCAAAATAGTCCCATTGCTCGTTTCCTTCATATTGCAATTCGTACAgcctaattaatattttacgtGTAAGTGACAAAGCTCTGATGATGTACTAGTTTGACGTAAATAATACTGGATTGTGACATTAACTGTGCGGATGATATAAACAACATAGTTACACACATAGTGTAAAAAGCAGGCAGCAAATGTTACAgatatttcagtaattttgtttCATGGAGGACGCATGCAACATTCgtaaataaaatgctgtatactccttataattatttttttattttgccacaAAATTAGATGCTGCGAACACAGCtagaaaatatgcaaataaaccacttttaaatgcagtatTGCTATGCACGGCAAAAATGAACTTATAAAATGACATGGATGCACAGAATATCTGCCATTTCATTTCTGCAATTTCCCCCCCTTATTTAATGCCGCTGGGATGTACTCAAGCATTTGTTTCCAGCTGACCACATGCTCACCTCCTGTTCTGGTACCAGGTTTTGACCTGCGTGTCGGTCAGGTTGAGAGAGGCTGCCAGCTCCATCCTGTCCTGCACGCTCAGATACTTCTGACGCTCGAAACTGCGCTCCAGCTGGGCGAGCTGATGGTCAGTGAAGGCGGTCCGCGCTTTCCGTGGCTTCTTCAGGCGAACCTGCGGGCTGTCTCTGCTGCTCGAGATCTCCCTGTCGCCCTCCTCCTTCACTGAAACATCACATTGAACGAAAGGGCACTGGTTATCGCGAGTTAGTTAGCCCAAGCGTTTCAGCAGACCCTGCTTTGGCAAGTTATCACTAGTTCTGGTGTCAAAGGTTTCCGCGCGTCCTCTGATGGTCCCGCGCGCGCGCTTGTAACCCTGTCAtgcatttttcagattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212176 lncRNA upstream 91379 3608919 ~ 3610050 (+) True G143638
TU212097 lncRNA upstream 208842 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 208864 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 208864 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 364740 3336261 ~ 3336689 (+) True LOC122326852
TU212203 lncRNA downstream 47202 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 58935 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 99061 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 215336 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA downstream 216683 3921080 ~ 3921279 (+) False LOC122326258
XM_043221479.1 mRNA upstream 67254 3617039 ~ 3634175 (+) True tsc1b
XM_043221608.1 mRNA upstream 98949 3544243 ~ 3602480 (+) True bcr
XM_043221609.1 mRNA upstream 98949 3544243 ~ 3602480 (+) False bcr
XM_043221006.1 mRNA upstream 158691 3514033 ~ 3542738 (+) True atp2a2b
XM_043221151.1 mRNA upstream 195842 3503222 ~ 3505587 (+) True arpc3
XM_043220941.1 mRNA downstream 32984 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA downstream 32984 3737381 ~ 3748407 (+) False stom
XM_043220943.1 mRNA downstream 32986 3737383 ~ 3748407 (+) False stom
XM_043221653.1 mRNA downstream 82362 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA downstream 82364 3786761 ~ 3918707 (+) False rxraa
unassigned_transcript_2519 other upstream 86198 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 381550 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 383534 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 754506 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1464234 2233659 ~ 2237195 (+) True G143321
TU212323 other downstream 402404 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 428039 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 504863 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 876654 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 877521 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile