RNA id: XR_006247456.1


Basic Information

Item Value
RNA id XR_006247456.1
length 493
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC122326258
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3919733 ~ 3921719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGGAGATGGCTAGCGATAAGGTTTCTTTACAAAGGTCACGGATCAGAGCGGTGTGTTCTGGGGCTGACAGCTGGTCTGAGGGAGGCCGTGTCTGTGTCAGCGATGCAGCTATGTGAATGGACTCCATCTCCACTACGGGACTGTCCACCGCCGCAGTGGTGGCCATTAGTGTATAGCTCATACTGGTTTTGATATTTCTCTCCAGCCAGGAGAGTGTGCCAGTGCCGGCTCTAAAGAACTCACATCAAAGGAACAAACAGAGGTTCTTGCTGACAGCGTGAGTGAGAAAAAATTGGAGACGGaatgctgtttatattttgtactgCCTGCAGCGATCAATTGCAGACTGAGCAACAAGTTCTTCCCAGGCTATCTCAGTGAGCTCAACAGTTGCTCCATCTTTGCTATTTCCACCTCCGAACTCATCGGCAAGTCCTGACCCTTCTTGTCCTGTGGAGCCaaagagagaaatgaagagGCCGAGATGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212214 lncRNA upstream 115964 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 150177 3763332 ~ 3769556 (+) True LOC122326834
TU212203 lncRNA upstream 167535 3751599 ~ 3752198 (+) True G143656
TU212176 lncRNA upstream 309683 3608919 ~ 3610050 (+) True G143638
TU212097 lncRNA upstream 427146 3488511 ~ 3492587 (+) True G143590
TU212299 lncRNA downstream 153808 4075527 ~ 4086526 (+) True G143717
TU212327 lncRNA downstream 185082 4106801 ~ 4108678 (+) True G143725
TU212347 lncRNA downstream 590207 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 629702 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 641615 4563334 ~ 4578128 (+) True LOC122326582
XM_043221653.1 mRNA upstream 1026 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA upstream 1026 3786761 ~ 3918707 (+) False rxraa
XM_043221650.1 mRNA upstream 1026 3786762 ~ 3918707 (+) False rxraa
XM_043221652.1 mRNA upstream 1026 3786765 ~ 3918707 (+) False rxraa
XM_043221654.1 mRNA upstream 1026 3827237 ~ 3918707 (+) False rxraa
XM_043221140.1 mRNA downstream 15659 3937378 ~ 3945807 (+) True brd3a
XM_043221141.1 mRNA downstream 15659 3937378 ~ 3945807 (+) False brd3a
XM_043221142.1 mRNA downstream 15659 3937378 ~ 3945807 (+) False brd3a
XM_043221682.1 mRNA downstream 25347 3947066 ~ 4074419 (+) True vav2
XM_043221683.1 mRNA downstream 25347 3947066 ~ 4074419 (+) False vav2
TU212191 other upstream 215336 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 215336 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 215336 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 304502 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 599854 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 185082 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 210717 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 287541 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 659332 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 660199 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile