RNA id: TU212330


Basic Information

Item Value
RNA id TU212330
length 3253
RNA type TUCP
GC content 0.42
exon number 2
gene id G143726
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4132436 ~ 4386212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTcagaacatttattatatgcagTAAGGTTGAGTCGCAACATTATACTTGCGCATTTACAGTATAGTTCAGCAGTTTTAAACACATAACCTTTATTTGGAGACTAGGGTCATGCGCCTGTCAAGGAGAATGACCATCAAAATCTGTATGCTCCCTTTGAGACCACTGGGGTTATAATTCAGTGCCATCAACTGGTAAAAAGTGGAAAAGCAGGATGTGATgctttatttaatatgcaaatagaAAACCCAGTGATgtaatgcataaattaaaaaaatggtttccacCTTGTTTATGGTAATAGGCAGTGCTTTTCAGCTCACAAAACAGACTACaatcgaataaaaaaaaatagaggcGTTGCATtggaaaaaattatgtaaaatgcaatataaacagTGAAacaatacaaataagcaaaatatttttgagaGTATTGGCTTGATAGTACCCCTGACAGGCACTGTGTATTAGAAAGTGAACACCGCACAGTCTTAAACACTAGACATGAACCTTCTCATGTACAATTATTCAGAAATGTTATTCAAATTATTCTTCAGAAATGTGTTtgagtttttataaaatacaagaCAAGCAGAAACGAATGGAGagaattaatacaatttatactattaattagattttattctaattaataCAGTCTTAAGACATATGGATGATCCAGATGgactgattattttttttaattgacattgGTGCCAACACACCTGGCTgagaaattagaaaataaattatgctgAAGGTAACTGAGCATTGTTTAAATTCTATATGAAGATAAGAAATAGTAAGCTAATATAATTAGATTGTTTGACTAATCAGTTTATTCACATAAAACTGTCCTGTGGTGTTCAACGTATGTATGCACCGCAAGTATGCACCGTATTGATCACATTACCTGAGGACTGCACCCTTAAAGTCACCCAATCCAATTAAACTAATCATTACACTAATCAGATAGACAGTCATTTGGCTAGGTCTCGTTCTAGACTGCAGTTACTGTAAGGGGAAAAGTAAGAATAGTgaacaaaaaagcaaagcaaatcaaagaaatgaaaaaagaaaacaaaatacttaTAGCACACATACATAAGCAATTGGAGGAGTGCATACCATCTATCATTCTAATACTGTAAACaacatattatacaatattGATAACACTACCTACAACAATACAATTTGCTCAACAGCTCTCAAAGAGACATGGAGGTTCATTTATCTGCCTGTTTTCCCAGAAGTCTTCTGCAGTATATACATGTTCATTCAAACTGTTGGTGGAAAAAGTtccaaaatagacatttttttaaatccatactTTGAAATCACATGCTTTTACATATGGGAGTCAGTCTTTGGAGAAATACGTTAGACGCACTAACACGGACAGGAACAgagatgtataaaaatatgtaaaacctTACAAAATGTATTCGCACTCATCATCAGAGCCAGTCAATGTTCAATTTGTGGAAATGCTTGGGTTTCCAGCACGCAACTGATATGTTTAAATGTCAGCTCTTTGAGATATTCACTCACAAAAAGGTACCACCACCAACCAGGCTTCAGTGTGATAAAataagaaagggaaaaaaacaaaaaaattttaatatatatatagaaatggaAAATCCTcttctttgaaaaagaaaatatagacATCTCAATTGAAACATTTCTCATAATCCAATGTTCTCACATCCTCAGCGGTTTCACAACCATCTCTGTTTTCCTTCGTTCCTGATGATGAACCCTCATGacagttgccatggaaacaagACCAGATGAATGGCTTGTCTTTTCATGGTGAGATGTGAGTTTGTCTGAGTGCAGAAGAGTCAGGCCAACCCATCCACCCCCACCCCACCACCAACACCACCACCTCCTCACCTAGAAGGCATATGGGTGAGCTACGCTTTTGtctgaaaaatacataaataactaCAAGCCCACTATGCGATGTTCTTAGTAGCATTTTCGTTTAACCTTTCCATGTAATTTCTGAGCTCTTTGGAGTCCCCGAGCTCGATGTCTGGGCATACCCATTTGATGTCGTTCTGACCGATGAGAAGCGGGCTTATGGATGGGCAGCCATTGCTGGGCTTGCTATGGCTGAAAGTGGTGAACTTGACCCGTTTCCTTTTGGTAGTGGGTGAGTTTATAGAGTCGCTCTTGTGATCTCTCCCAGTGCACCCTGAGTCAGAGGCTGACCTGTGGACCTGGCCTTGAACGCTCTTCTGAGAGGAAAGGCCATTGAGGAGCTGGCTACCTTCCTCCAGGCCCAGCCCGGAGTCCATGGTGCCGCCCAGCTCCTCTTGATCTAGACACAAACCTGCCTGACTTTCCAACAGCTCAGCGTCCTGTCCTAACCAAACCCAGTCGTGGGCATGAGCCATGGTCTCCTGGCCCTCCAATGGGAGCTGCTTGTTGCGATACTTGAGGGCGTAGGAGACGCAATTGATTAGGAATACCAGGATGGCCAGACAGAAGACACCTAGCAGGGCGTACATGCCTATTTCCAGGTCTGTAAGCCCACGCCGAGACTGCAATAGATCATCCTCTCCATTACGTCCAGGTGGAAGGTCTGCTTGGGCTGGGAATTCAGAGAAATCCACTGGAATATCAGCAGCTGAGAGCCTATCACCGCTTGCTTTTCCTGGTATGGAGGTTTTGATGGTGGTAGCGCCTCGGTTCATGATTCCAGCCTCCATGTCTGAGATCGAACCGCCGTAGTATGGGGCATTGGGTCTGTATCTCCTGTCACTTGCGCTGTTTCCAGTTTCTTCATCACGGCCAAACTTCACATGGACGTTTGCGTTGCCTGCGGCCAGAACAGTGCGccgtttgtttttttggcacgATTCGGGTCCGTACATCTCCAAACGAACCAACATGCCTTGACCTTCACCTTTAGCCACCAACACTGGCCACCTCCAGCTGGGGCTTTTCTTCACCGACACCACCTGGTCATCCAGCGAAGTGGCCGTAAGGACAAAATGAGCAGAGTTATAGAGGTCAAGAGGGGTCATGGAGCCATCGCTGAACTGAAGCCACGCACTGACAAGGGATTcctgaaagagaaacaaaacataaacagaGGCTCTCAGGTAATGCTAATTTCTTTGCATCAACTATGCACGATTCTTAACCCCATTGTAGGACCGTTTAAAAGCTATAAAAGTCCCCAAAACCACATTTCAAAGAGAACAGACGCACTGATCAGCGGGAGATTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212327 lncRNA upstream 23758 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 45910 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 210717 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 211157 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 328667 3803458 ~ 3803769 (+) True G143664
TU212347 lncRNA downstream 125714 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 165209 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 177122 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 202514 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 365005 4751217 ~ 4751510 (+) True G143826
XM_043221735.1 mRNA upstream 26284 4102906 ~ 4106152 (+) True stx2a
XM_043221687.1 mRNA upstream 58017 3947067 ~ 4074419 (+) False vav2
XM_043221210.1 mRNA downstream 124158 4510370 ~ 4520829 (+) True smpd4
XM_043221211.1 mRNA downstream 134753 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221386.1 mRNA downstream 152050 4538262 ~ 4544632 (+) True crkl
XM_043222093.1 mRNA downstream 168146 4554358 ~ 4557626 (+) True nefla
XM_043221560.1 mRNA downstream 194422 4580634 ~ 4583302 (+) True rpl17
TU212323 other upstream 18703 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 428039 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 428039 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 428039 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 517205 3615160 ~ 3615231 (+) True trnam-cau_115
XR_006247544.1 other downstream 194839 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 195706 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 196887 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 318989 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 344391 4730603 ~ 4730881 (+) False slc45a2

Expression Profile