RNA id: TU212360


Basic Information

Item Value
RNA id TU212360
length 465
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G143745
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4551421 ~ 4552468 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTACACAAAATGGTGCTCGCTTTTATTTGCTGTGTCAGAGTGGGGCAGTCCAACACAAGGGGGTTTACAAACGGTGATGAAATGTGAGAATGTTTAGTACGGGGGGGTGACGGTCGCGTCCGTGTCATGTGTTCACTTTCATTCATTTGGTGGCCTTCAAACAGACTTGCGTCCGATAGTGCGCCCTtcgtttattttatgtttaggGGTGTTTCAGTCTGCGGGTTTGTGTCAGTTCTTCACTTTTTGACCTTGCCCTGGGCGGCCTTGATCTCAGGTACAATGACCTCATTCCAGAAAGGCAGGGCACGAGCAATGGTGTCCTTTAAGCTCTCACAGATGGGAAGCTCGCCCTCTTTCAGGCCCTTGTATCGTCTTGACTGGTGAAAGATGGAACAAACATGCAGCCAAGCCATCATCAGTGTTTACATGAGTGACGTAAAAACAGACAGTGTCACTTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212347 lncRNA upstream 27241 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 442743 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 464895 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 629702 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 630142 3921080 ~ 3921279 (+) False LOC122326258
XR_006247494.1 lncRNA downstream 10866 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 36258 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 198749 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 199439 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 247634 4800102 ~ 4862403 (+) True G143872
XM_043221386.1 mRNA upstream 6789 4538262 ~ 4544632 (+) True crkl
XM_043221211.1 mRNA upstream 27385 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221210.1 mRNA upstream 30592 4510370 ~ 4520829 (+) True smpd4
XM_043221519.1 mRNA upstream 192118 4338972 ~ 4359303 (+) True LOC122326553
XM_043221521.1 mRNA upstream 220067 4287203 ~ 4331354 (+) True LOC122326555
XM_043222093.1 mRNA downstream 1890 4554358 ~ 4557626 (+) True nefla
XM_043221560.1 mRNA downstream 28166 4580634 ~ 4583302 (+) True rpl17
XM_043221810.1 mRNA downstream 33422 4585890 ~ 4588458 (+) True nkx6.1
XM_043221811.1 mRNA downstream 33422 4585890 ~ 4588458 (+) False nkx6.1
XM_043221551.1 mRNA downstream 134448 4686916 ~ 4690339 (+) True abraxas1
TU212330 other upstream 165209 4132436 ~ 4386212 (+) True G143726
TU212324 other upstream 337649 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 437688 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 847024 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 28583 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 29450 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 30631 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 152733 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 178135 4730603 ~ 4730881 (+) False slc45a2

Expression Profile