RNA id: XM_043221907.1


Basic Information

Item Value
RNA id XM_043221907.1
length 1737
RNA type mRNA
GC content 0.51
exon number 7
gene id slc45a2
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4730603 ~ 4745266 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTTTATCGCTCCGCTATGCAGTAGGTATTAAGAGTTTCAAGACTGACAACCATGACTCTCCTAACCGAGGACCAGCCTTGCAGGTTTTCCGCACCGGACAGCCCGCTCGCATCCATGGAGCACTACCCGGTGGACTCGGGACCAAAAGAGGACTATTTGGATTGCATGGAACCAGCTGTGTTTGGAGCGGTGGAGCCTCCGAAGCGCACCAGAGGAAGGCTTATCATGCATGGCATGGTCATGTTTGGAAGGGAATTCTGCTATGCCGTCGAGGCAGCATTTGTCACGCCAGTGTTGCTGAGCGTTGGACTCCCCAGGCGCCTGTACAGCCTGGTGTGGCTTATCAGCCCTGTTTTGGGTTTTATCCTACAGCCTGTCATCGGCTCGTCAAGCGACTACTGTAGGTCCCCATGGGGCCGAAGGCGACCGTACATACTCTTGCTCGGGATTATGATGTTAGTTGGcctgactttatttttaaatggagaTGCGGTCACATCAGCTATACTAGAGGACAGAAATGTTAAAAGGACATGGGCGATCGTAGTGGTCATGTTTGGAGTGGTGTTGTTTGACTTTGCGGCGGACTTCATTGATGGGCCCATTAAAGCCTATTTGTTTGATGTGTGTTCTCATCGGGATAAGGAGAGAGGGCTTCATTATCATGCCTTACTCACAGGTCTAGGTGGAGCCTGTGGATACTTGATTGGAGCCATGGACTGGGGTCACTCTGCGCTTGGTGTCGTACTGGGTTCAGAATACCAAGTTATCTATTTTTTCTCATCATTGACCTGGGGCATTTTTCTCACCACGCACCTTTTCAGCATCCCGGAGAAATCACTGATGAAAGATCACAGTTCAGACTCTTGTCCATCTACCTCGCTGCTCCTGGAAGAGCCGCATCATAACCTCTATGGAGCAGTACACAAAGAGCCACCTCCTCTGCCTGAAATGAGACAGCGCTCATTCTCTGCCCTGAGTGAAGCCAATGCAGTCACGCCCAGTGCCAAGCAGCCTAGCAGCGAGGTGCAGAAGAGAATGACCCTGAAATCTCTACTGTCAGCTATGATTAGTATGCCCAGCCATTAccgctgtctgtgtgtgtgtcatctgctAGGCTGGACGGCCTTCCTGTGCAACATGCTCTTCTTCACTGACTTCATGGGGCAGATTGTATATAAGGGGAACCCCTATGCAGAACACAATTCCACCTCATATGCGACATATGAGAGAGGGGTTGAAATAGGCTGCTGGGGCCTGTGCATCAACGCTGTATCCTCTGCACTCTATTCATATGTGCAGAGGCTTCTCCTGCCATATATTGGCCTAAAGGGACTGTACTTCCTCGGCTACTTTATGTTTGGTTTGGGAACCGGTCTGATCGGCCTGTTTCCAAACATTGTGGCCACGCTGACACTCTGTACTGTGTTTGGAGTTATGTCTAGCACTCTCTACACCATCCCATTTAACCTCATCTCGGAGTACCACAAGGCTGAAGAGGAGCAGAGGAAATTGCGCAGCGATGAACCAGCTCTGGAGGGCCGTGGCACTGGCATGGACTGCGCAGCTCTTACCTGCATGGTGCAGCTGGCTCAGGTCATAGTGGGAGCTGGTCTTGGAGCCCTGGTCAATCTAGCAGGCAGTGTGATCGTTGTGGTCCTCTCTGCCTCAACAGTATCCCTACTTGGCTGCCTCTTTATTGCTCTCTTTATGTGATGTACATATTAAGCctcaa

Function

GO:

id name namespace
GO:0009416 response to light stimulus biological_process

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212368 lncRNA upstream 141457 4588726 ~ 4589152 (+) True G143751
XR_006247494.1 lncRNA upstream 152481 4563334 ~ 4578128 (+) True LOC122326582
TU212360 lncRNA upstream 178141 4551421 ~ 4552468 (+) True G143745
TU212347 lncRNA upstream 206429 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 621931 4106801 ~ 4108678 (+) True G143725
TU212488 lncRNA downstream 5951 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 6641 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 54836 4800102 ~ 4862403 (+) True G143872
TU212577 lncRNA downstream 145872 4891138 ~ 4893087 (+) True G143887
TU212623 lncRNA downstream 269464 5014730 ~ 5028033 (+) False tnksa
XM_043220714.1 mRNA upstream 1249 4720756 ~ 4729360 (+) True amacr
XM_043221443.1 mRNA upstream 21575 4705157 ~ 4709034 (+) False btc
XM_043221442.1 mRNA upstream 25833 4698726 ~ 4704776 (+) True hpse
XM_043221441.1 mRNA upstream 32027 4692192 ~ 4698582 (+) True helq
XM_043221551.1 mRNA upstream 40270 4686916 ~ 4690339 (+) True abraxas1
XM_043220879.1 mRNA downstream 9360 4754626 ~ 4757400 (+) True LOC122326163
XM_043221607.1 mRNA downstream 15899 4761165 ~ 4793419 (+) True rai14
XM_043221604.1 mRNA downstream 15899 4761165 ~ 4793419 (+) False rai14
XM_043221605.1 mRNA downstream 15899 4761165 ~ 4793419 (+) False rai14
XM_043221606.1 mRNA downstream 24160 4769426 ~ 4793419 (+) False rai14
TU212480 other upstream 21168 4705201 ~ 4709441 (+) True btc
XR_006247545.1 other upstream 147452 4583099 ~ 4583157 (+) True LOC122327011
XR_006247542.1 other upstream 148619 4581918 ~ 4581990 (+) True LOC122327008
XR_006247544.1 other upstream 149483 4581051 ~ 4581126 (+) True LOC122327010
TU212324 other upstream 516837 4209260 ~ 4213772 (+) False G143725
XR_006247451.1 other downstream 154224 4899490 ~ 4910505 (+) False fybb
XR_006247485.1 other downstream 202318 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other downstream 202318 4947584 ~ 5025628 (+) False tnksa
XR_006247443.1 other downstream 755837 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 761289 5506555 ~ 5508295 (+) False sdhaf1

Expression Profile