RNA id: XR_006247486.1


Basic Information

Item Value
RNA id XR_006247486.1
length 3370
RNA type transcript
GC content 0.56
exon number 24
gene id tnksa
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4947584 ~ 5028046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTTTTCTCTGCCAGAGGGGGATTTGAGTGCGAAAATGGCGACGTCTCGTCGCACTtcccagcagcaacaacaacaaaacttatCCTCCCCACCAAGACCCGAGCCCAGTCCCCTCGCTCCTCCGGAGTCGCCCACAGACATCGGCGGCTCCGCGGCTGACGGGGAGCCTGAAAGCACCGGGGATCCGGAGATCGCTGCTGAAACCCCCGCTCCGCTCCTcagctccagcagcagcagctccagcTCGAGCAGCGCTAGCTCGTCTACCACCGGCGGGGGCAGTAGTGCGGGCTCCACTCCCGACTCCGGTAGTGCCAGTTCTGGAGGCAGCGTCTGCGGGACGAGTGGGGCTTTCAGGGAGCTGTTTGAGGCCTGCAGGAATGGGGACGTGTCTCGGGTGAAGAAGCTGGTGGATTCGGTCAATGTAAACGCGAAGGACATGGCCGGGCGCAAGTCCACCCCGCTTCACTTCGCCGCAGGTTTTGGAAGGAAAGACGTTGTGGAACATCTCCTGCAGACGGGGGCAAATGTTCACGCGCGAGACGACGGAGGACTGATCCCGCTGCACAACGCCTGTTCCTTCGGTCACGCCGAGGTCGTCAGCCTGTTGCTCTGTCAAGGAGCTGATCCCAACGCCAGAGACAACTGGAATTACACTCCCCTCCACGAATCCGCCATCAAGGGCAAAATTGACGTATGCATTGGCGAATACAAGAAGGACGAACTCCTGGAAGCTGCGAGGAGCGGAAATGAAGAGAAGCTCATGGCCCTGCTCACGCCGTTAAACGTCAACTGCCATGCCAGCGACGGTCGTAAGTCTACTCCATTGCACCTGGCTGCCGGATACAACAGAGTCCGAATAGTACAGCTTCTCCTGCAACATGGCGCTGATGTTCACGCTAAAGATAAAGGTGGTCTTGTTCCTCTACACAATGCCTGCTCATATGGACACTACGAGGTCACAGAGCTACTGCTAAAGcatggGGCGTGCGTTAATGCCATGGACCTCTGGCAGTTCACCCCTTTGCACGAGGCTGCCTCCAAGAATCGCGTGGAGGTCTGTTCCCTGCTGTTGAGTCACGGAGCCGACCCCACGTTGGTCAACTGCCATGGGAAGAGCGCGGTGGACATGGCCCCGACCCCAGAACTCAAAGAGAGGCTCACATACGAGTTTAAGGGCCACTCTCTTCTTCAGGCAGCGCGGGAAGCAGACATGACCAAGGTGAAGAAGACCCTAGCTTTGGAGATCATCAACTTCAAGCACCCACAGACACACGAAACGGCACTGCACTGTGCTGTCACCTCACCTCACCCAAAACGAAAACAGGTCACTGAACTGCTGTTACGGAAGGGAGCCAATGTCAATGAGAAGAACAAGGATTTCATGACTCCTCTCCATGTGGCAGCAGAACGGGCGCACAATGACATCATGGAGGTTCTGCAGAAACATGGGGCGAAGatGAATGCTGTTGACACGCTGGGTCAGACGGCGTTGCACCGTGCGGCTCTGGCGGGCCACTTGCAGACATGCAGGCTACTGCTAAGTTATGGAGCGGACCCCGCCATCGTCTCCCTGCAGGGCTTCACAGCCGCACAGATGGGCAATGAAGCTGTACAGCAGATCCTAAATGAAAACATTCCAGTGAGGAATTCAGATGTGGATTATAGACTCTTAGAAGCAGCAAAAGCAGGAGACTTGGACACTGTGAAGCAGCTTTGCTCCCCTCAGAATGTGAACTGTCGAGACCTGGAGGGTCGTCACTCCACTCCGCTCCACTTTGCCGCCGGCTACAATCGCGTGGCTGTGGTTGAGTATCTCCTTCACCACGGCGCCGACGTCCACGCCAAAGACAAAGGAGGTTTGGTGCCGCTGCATAACGCCTGCTCGTACGGCCATTACGAAGTGGCAGAGCTGCTGGTCAGACACGGAGCGTCCGTCAACGTGGCCGACCTCTGGAAGTTCACTCCGCTGCACGAGGCGGCGGCCAAAGGCAAATACGAGATCTGCAAACTGCTTTTGAAGCATGGAGCAGACCCCACCAAGAAGAATCGGGACGGAAACACTCCATTGGACATGGTGAAGGAGGGAGACACAGATATCCAGGACTTGCTGAGAGGAGATGCAGCGCTTTTGGATGCCGCCAAAAAAGGCTGCCTGGCGCGGGTCCAGAAACTGTGCAGCTTGGAGAACATCAACTGCAGAGACACACAGGGACGCAACTCGACTCCGCTGCACCTGGCAGCTGGCTATAACAATCTGGAGGTAGCGGAGTATTTACTTGAGCACGGGGCGGACGTCAACGCGCAGGACAAAGGTGGCCTTATTCCCCTCCACAACGCTGCCTCGTATGGGCATGTGGACATTGCGGCCCTGCTGATCAAGTATAACACCTGTGTAAATGCCACTGATAAATGGGCCTTCACACCCCTCCATGAGGCTGCGCAGAAGGGCCGCACACAGCTCTGCGCTCTGCTGCTGGCCCATGGAGCCGACCCCACCATGAAAAACCAGGAGGGACAGACGCCGCTGGACCTGGCGACGGCTGATGATATCCGGGCGCTGCTGATTGATGCCATGCCCCCTGAAGCGTTGCCTAGTTGTTTCAAGCCCCAGGCTACGGTGGTCAGCGCCTCTGTCATCTCACCGACATCTACCCCTTCCTGTCTGTCCGCTGCCAGCAGCATAGACAATCTGGCCGGGCCCTTGACAGAACTTGCCGTACCTGGAGCCTCAGGCCCTGCTGATGGGGCTACTGCATCAGAGAGGAAGGAGGGAGAAATTACAATTCTGGATATGAACATCAGTCAGTTCCTGAAGAGTTTGGGCTTGGAGCATTTGCGGGATATTTTCGAGCGGGAACAGATTACGCTGGATGTGCTGGCTGACATGGGGCACGAGGAGCTCAAGGAGATCGGGATCAACGCGTACGGCCACAGACACAAACTCATCAAAGGCATCGAGAGGCTGCTGGGCGGTCAACAAGGTGCCAACCCATACCTGACATTCCACTGTGCGAGTCAGGGCACGGTGCTGATCGACCTGGCCCCCGATGACAAAGAGTTTCAGTCTGTAGAGGAGGAGctacaAAGTGCACGATCAGAGAGCACAGAGACGGTGGCAACGCTGGGGGTGTTTTCAGCAGATATAACATCCTGAAGATTCAGAAGGTGGTGAACAAGAAGCTGAGGGAGCGATACGCGCACAGGCAGAAGGAGATCGCGGACGAGAACCACAACCACCACAACGAGCGCATGCTCTTTCACGGGTCACCGTTCATCAACGCCATCATTCATAAAGGGTTTGACGAGAGGCACGCTTACATCGGAGGGATGTTTGGAGCAGGGATCTACTTTGCAGAGAACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212577 lncRNA upstream 54497 4891138 ~ 4893087 (+) True G143887
TU212559 lncRNA upstream 85181 4800102 ~ 4862403 (+) True G143872
TU212489 lncRNA upstream 195325 4751907 ~ 4752259 (+) True G143827
TU212488 lncRNA upstream 196074 4751217 ~ 4751510 (+) True G143826
TU212368 lncRNA upstream 358432 4588726 ~ 4589152 (+) True G143751
XR_006247519.1 lncRNA downstream 9302 5034930 ~ 5067800 (+) True LOC122326855
XR_006247454.1 lncRNA downstream 44699 5070327 ~ 5075603 (+) True LOC122326250
XR_006247455.1 lncRNA downstream 44699 5070327 ~ 5075603 (+) False LOC122326250
TU212636 lncRNA downstream 78229 5103857 ~ 5106226 (+) True G143926
XR_006247500.1 lncRNA downstream 85854 5111482 ~ 5114284 (+) True LOC122326722
XM_043220962.1 mRNA upstream 35768 4899490 ~ 4911816 (+) True fybb
XM_043220963.1 mRNA upstream 35768 4899490 ~ 4911816 (+) False fybb
XM_043220964.1 mRNA upstream 35768 4899490 ~ 4911816 (+) False fybb
XM_043220965.1 mRNA upstream 35768 4899490 ~ 4911816 (+) False fybb
XM_043220966.1 mRNA upstream 37079 4899490 ~ 4910505 (+) False fybb
XM_043220921.1 mRNA downstream 50928 5076556 ~ 5097197 (+) False si:dkey-247m21.3
XM_043220919.1 mRNA downstream 50934 5076562 ~ 5097197 (+) True si:dkey-247m21.3
XM_043220957.1 mRNA downstream 93466 5119094 ~ 5128226 (+) True pde6b
XM_043220824.1 mRNA downstream 106577 5132205 ~ 5133306 (+) True LOC122326134
XM_043222026.1 mRNA downstream 108117 5133745 ~ 5138828 (+) True si:dkey-30k6.5
XR_006247451.1 other upstream 37079 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 216703 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 238143 4705201 ~ 4709441 (+) True btc
XR_006247545.1 other upstream 364427 4583099 ~ 4583157 (+) True LOC122327011
XR_006247542.1 other upstream 365594 4581918 ~ 4581990 (+) True LOC122327008
XR_006247443.1 other downstream 475475 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 480927 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 483037 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 706812 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 706812 5732440 ~ 5734253 (+) False neu3.1

Expression Profile