RNA id: TU212636


Basic Information

Item Value
RNA id TU212636
length 2329
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G143926
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5103857 ~ 5106226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGAGTACAAATATTAGTTATTGACACTGGTTTAAAGTATAATCAGATCTCCGGGTGAAATTTGTCCTTCACTTTTATTTCTTCAAGAAcaccacaaaaacattttcacattttaaaggcAGTAAAATTGACAACTTAAAATCACAGATCTGTATTGTCTTCTCATGGTCCTGTAGCAATTATCtgttgagatatatatatatatataatatatatataaattagttaAAGGGCAGGTTTTTGCACCaatcacaaatgaaataaattatttgtcttgttttaaatttaaaactgtattaaatcTGCTTCTGAGATCCTAGTTTCATAGTCAGGGCTTAgccaattaggacatttaagtaatttttataaacataccTTAGAAAAAATCATTACTGGTATctatcttaagacaaaacaaaggcccTGGTATGTTTTAAGTTCAGATCAGTTCAAGTTTCTTTCaattgaaacagctcagatttacatttgtttgtttacattagtataggactaggcttaagccttgtctgtgaaactagtggttagcatctcagaaatatggTATTTtgatagatatataaaaaaattaacacataCATGTAATTTTGTCCTCCAGTGTGTATAATAACCCCTGAGTTTGTACAGTAGGCTAGCACAATATTCAAAATGTTCATATTCAGTTCAAACATGGGTGGAATATTTGGGAATATAAATCTTGTTAATTTCATGATTATTCATAACATTTCTAAGAACTGAATATCgtgtttcatgtgtttttttcagctgttgaGGCCCATTTGTGGATACATTACACAGACGAGTCATTAACCAGTTGTGTCGTACGAGTTGCAAAACAAACAGCACTGTGGATGGTATGAAATGACAGTTGTTCCAAGTCTTTGTCATCAACCCCGAAGAAAGAGCCTCTTCTTAAAGAATCTATCACTGGTGTGTTGCAACAAGCTAGAATTACATTCACACCAACTTCTTTATAgtctttcaaaatcattttgaagGTGCTCACTCCTGTTGTGTCTATTATAGATATGCAGGAGCAATCTAAGATGATAGTATGAAAATCAGCGTTTTTGGTAAGCAAGTTTACACTTACATCTCCATTGGTTTCATCTACTCTATCTGTTTTTTTCGCAGCCTTATCTCTAGCTTTTTTCTCAAGTTTTCTTCTGCGGGTTATTTCAAGGAATGGCTCAAGATCAGTAGctttatataaagattttaaaaagaagtctTTGTTGGCGTAAAAAAGAGGTGCTTGAAAACGAAAGATCTTCACCTTTGGAACAGGCGAAAGATTGTCATACTCTTCCATGTCCTCAAAGTCATTGGTTTGTTCAATTTGTCCCAGTAACGAAACCTTAGGATTCTGAGTCTGGACTACCACGCAGATCATAGAGAAGACCACACCAATCAGAAGTCCAATCTCCACGCTAATTAAAGCAGTTGAGCTCATGGTCACCAACCAGACAATTGCTTCGATCTTGCTTTCACGCCATTGCTTAGGGACGTCTACAAATTTGCGCAGGGCGCCTCGAAGACTGACAATGATGATGCAGGCGAGGACGCATTTCTGCAGGGCGTAGAaaaatggtgcaaaaaaaagaaggacCAGAAGAACCACTAAGGCACTCACTACACTGGAGACCTGAGTCTGGCAACCTGTTGAGTCCTTCACCATAGTTTTTGCAAGGGCGGCACTTGTAGTGAAAGAATGGAAAAATGAAGGAATTATATTGCAGAACCCAATTGCTATCATTTCTTGGTTGGGCCTAACTGTGTAGCCATTCTTTTTAGCAAACATCTCAGACAGAGAAACtgtaaatgcaaaactgatgaCAGCTAATGGAATGGCATCATATGCTACACGGGGCATCAGTTCAACCCTGGGCACCTTTGGCGGAATGAAACCAGTTGGAATGGCACCTGAGATACTGGAGCTAAACTGTCCGTTTAGATCAGCAAAGTGAGAAACTATTGTGGCAACTGCCACTACGACCAGTTCGATGGGCATTGGGATCTTTAAACGGTCTTTATAGCGATCCTGGATCTCTTTTGCTGTAAGCAATACTATGATGCATATGGCACTTGTTATTAAGTCACAGTAGTTGGTTTTGTGTATGTTCTTGAAGATGCTGATCCAAGTGACCACCACTGTGCCGTAGCCTTGGTGTCGAGGGATCTTAAGGCCAAGCAGGTACTTTGCCTGGACTGTGAGGATAGTGCAAGATGCCCCAGTGGCAAAGCCATCAAGCATAGGAGCAGACAGATAAACCGAGACAAAGCCCAGCCTGAGAATGGCCATCAGCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247454.1 lncRNA upstream 28254 5070327 ~ 5075603 (+) True LOC122326250
XR_006247455.1 lncRNA upstream 28254 5070327 ~ 5075603 (+) False LOC122326250
XR_006247519.1 lncRNA upstream 36057 5034930 ~ 5067800 (+) True LOC122326855
TU212623 lncRNA upstream 75824 5014730 ~ 5028033 (+) False tnksa
TU212577 lncRNA upstream 210770 4891138 ~ 4893087 (+) True G143887
XR_006247500.1 lncRNA downstream 5256 5111482 ~ 5114284 (+) True LOC122326722
TU212653 lncRNA downstream 45331 5151557 ~ 5151889 (+) True G143937
TU212747 lncRNA downstream 221004 5327230 ~ 5328405 (+) True G144007
TU212722 lncRNA downstream 259966 5366192 ~ 5374922 (+) True G143990
TU212861 lncRNA downstream 395807 5502033 ~ 5517936 (+) False kcnk12l
XM_043220921.1 mRNA upstream 6660 5076556 ~ 5097197 (+) False si:dkey-247m21.3
XM_043220919.1 mRNA upstream 6660 5076562 ~ 5097197 (+) True si:dkey-247m21.3
XM_043221444.1 mRNA upstream 75811 4947584 ~ 5028046 (+) True tnksa
XM_043220963.1 mRNA upstream 192041 4899490 ~ 4911816 (+) False fybb
XM_043220957.1 mRNA downstream 12868 5119094 ~ 5128226 (+) True pde6b
XM_043220824.1 mRNA downstream 25979 5132205 ~ 5133306 (+) True LOC122326134
XM_043222026.1 mRNA downstream 27519 5133745 ~ 5138828 (+) True si:dkey-30k6.5
XM_043222027.1 mRNA downstream 32935 5139161 ~ 5141501 (+) True zgc:103482
XM_043222095.1 mRNA downstream 97238 5203464 ~ 5252913 (+) True efna5a
XR_006247485.1 other upstream 78229 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other upstream 78229 4947584 ~ 5025628 (+) False tnksa
XR_006247451.1 other upstream 193352 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 372976 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 394416 4705201 ~ 4709441 (+) True btc
XR_006247443.1 other downstream 394877 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 400329 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 402439 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 626214 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 626214 5732440 ~ 5734253 (+) False neu3.1

Expression Profile