RNA id: TU212747


Basic Information

Item Value
RNA id TU212747
length 1044
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G144007
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5327230 ~ 5328405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGTAACCAATCAGGTCTGCTCCGGGAATGGAAGCAAATATCCGTTcacttgcacacacactttttgtttGCCCACAGTCTCTCTCGTCAGAGTTGTCCCCACAGTCGTCCTGTTTGTTGCACTGCAGAGCAGCGTTTATACATCTTCCTAGCAAGTCAGGAGCAAATTACGCAAGTTAGTGATCATGCACCTGCTTTCCTTATAAATGTTCTCCTTATGAAATCGATGTAGGACAAATCTTAAAGGTTCAAATATGCTGTGTTGTTGTGAAGAAGTTGATGGAGAGAATTACCACTGTCACAGGTGAACATGTCCTTACAATTGACAGGTTCAATCCCACAATCCTTGGAGGGATGACAGGCTCTTTCCTCTGTGAGGGATGGACTACAATCCTCACCCCCAAACTGAGCCGGCCTCAATACAGACCTGGTTCGGAACTAAATCCCACAATATTCACACACTTACTAGGGCAGTGTACTATACTAAGCAATTTCACACAGCAAGAATGGTGACATTGATGAATATTAACACAATATTAGAACAAAGCTACATGCTGATATTTGGAAAATGTGTTCAGAAGCGGCagttaatgttcaaaaaaccatttttattttataacattttaaagcaacacTATTATAACTAACTTTTAAAAGTGGTTTTAATTTTGAGAAGCTGTCAGCTTTTGACCgatataattatttatcagcggtctgacggcacccattcaccgcagagggaCTATTGGTGGATGCAATTTCTCCAGATCGGTGTAAACGaagaaactcatctacatcttTTGAATCAcctttaaatctgttttaaagaGCCGGACCAACTGTGGAATATTTTGAACGTTTTTTTAATAGCTGTGTGCTTTACTCACAGATTTTTTGGCACACGGCGAGCACTCTGACCAGGGTCCAAACTCAGTCAGCTGACAGTGAATGGAACAAGTCCCAACATTGCACGCTCTGGTCTCTTGTGTCTTACACAGCTggaaacaattgttttttttccagtggtCATCATATCGTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212653 lncRNA upstream 175341 5151557 ~ 5151889 (+) True G143937
XR_006247500.1 lncRNA upstream 212946 5111482 ~ 5114284 (+) True LOC122326722
TU212636 lncRNA upstream 221004 5103857 ~ 5106226 (+) True G143926
XR_006247454.1 lncRNA upstream 251627 5070327 ~ 5075603 (+) True LOC122326250
XR_006247455.1 lncRNA upstream 251627 5070327 ~ 5075603 (+) False LOC122326250
TU212722 lncRNA downstream 37787 5366192 ~ 5374922 (+) True G143990
TU212861 lncRNA downstream 173628 5502033 ~ 5517936 (+) False kcnk12l
TU212867 lncRNA downstream 209795 5538200 ~ 5539464 (+) True G144081
TU212929 lncRNA downstream 303636 5632041 ~ 5632851 (+) True G144126
TU212933 lncRNA downstream 356423 5684828 ~ 5685097 (+) True G144129
XM_043221707.1 mRNA upstream 5133 5315013 ~ 5322097 (+) True c7b
XM_043221708.1 mRNA upstream 5133 5315015 ~ 5322097 (+) False c7b
XM_043221710.1 mRNA upstream 12821 5308926 ~ 5314409 (+) True LOC122326643
XM_043221714.1 mRNA upstream 36200 5289647 ~ 5291030 (+) True LOC122326646
XM_043222095.1 mRNA upstream 74317 5203464 ~ 5252913 (+) True efna5a
XM_043221146.1 mRNA downstream 9951 5338356 ~ 5340138 (+) True htr1ab
XM_043220994.1 mRNA downstream 33553 5361958 ~ 5365041 (+) True ndr1
XM_043221223.1 mRNA downstream 114706 5443111 ~ 5466387 (+) True rictorb
XM_043221224.1 mRNA downstream 114706 5443111 ~ 5466387 (+) False rictorb
XM_043221225.1 mRNA downstream 117778 5446183 ~ 5466387 (+) False rictorb
XR_006247485.1 other upstream 301602 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other upstream 301602 4947584 ~ 5025628 (+) False tnksa
XR_006247451.1 other upstream 416725 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 596349 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 617789 4705201 ~ 4709441 (+) True btc
XR_006247443.1 other downstream 172698 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 178150 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 180260 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 404035 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 404035 5732440 ~ 5734253 (+) False neu3.1

Expression Profile