RNA id: XM_043220893.1


Basic Information

Item Value
RNA id XM_043220893.1
length 1723
RNA type mRNA
GC content 0.43
exon number 3
gene id neu3.1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5732440 ~ 5735137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCGCAGTGGAGGAAGCTGGAGACGGAGAGCTGCAGTACACAGCACTGTATGAAACATTTGAACGAAATATTTGAAGTTATACGGAACGCGAAGTGGTTGTATGTATGCATGGCGTCAAAAAGCCACCCGGGTCCCCTGCACGCTCTGCCTGCACGAACAGCATTATTCCAACAGAAAGATGGGAAAACATACAGGATTCCTGCTTTAATCTACATCAGTGATGGTCAGACTTTCCTTGCATTTGCTGAAGAGCGCAGCACTCCATGTGACAGTGATGCAAAAGTGCTGGTCATGAGGAGAGGAACACTGCAAAATGGATCACttcaatggtCTCCTGTTCAGACGCTCTATTCTGCTTGTTTGCCGGATCATCGCACCATGAATCCTTGTCCAGTCTACGAGAGGAAATCCAAAACCATATATCTTTTCTTTGTCTGCATATTAGGCAATACCACAGAGTATCACCAGATTGTTACGGGTAAAAACCAAGCACGGTTGTGTTACGTCACTAGTGCAGATTATGGCCAAAACTGGAGCAAAATAACCGATTTAACGAATAGCGTTATTGGAGATGAGATCTGCGACTGGGCTACTTTTGCAGTTGGACCAGGACATGGTATTCAGATGAAAAGTGGAAGACTGATCATTCCAGCATATGTTTATTACATACACTGTAGGTGTTTTCCTTTTCGTTTTCCACTCATAGTCAGGCCTCATGCTTTATCGTTCCATAGTGATGACTGTGGTGTCACCTGGCAGATGGGAGGAAAAATCACAATGAAATCCTGCGAATGTGAGATGGCTGAGATCATAGACCACGCTGATGGGAGCCATTTGTACTGCAACGCTCAGAGTACTTGTGGCCACAGAGTGGAGGCCTTAAGTGAGAGCAGCGGGGCAGCTTTTGACAATCCTTATGTTGCTCAGAAACTCGTGGAGCCCTATCATGGCTGCCAGGGTAGCGTGTTGAGCTTCCCTGCGCCCGAGCCAtcggaggaagaggagaagagcGCAAATGACTGCTTGACTCGGTCAGACACAAAAACATGGTTACTCTATTCCCATCCAACTGATAATAAGAAAAGGAAGGACCTTGGAGTTTACTTGAATAAATCGCCCTTGAAAACGTCTGGTTGGGGCCAACCGTGGATCATCTATAAGGGTCCCAGCGGATATTCAGATTTGACTCGGTGTGAGGAGCGATTTGCCTGCCTCATGGAGTGTGGAGAGAAAAGTGAGCTTGAGGAAATAGCCTTCGTGGAATTTAAACTCAGTGACTTCTTGTGCACCTGAAATGGTGAAAGTACTTTCCTGGCACGTTTTACAGGATTGGTTcaccacaaaatgaaatattgttcATCTTCAGACCTTCCAAGATATAAattatgagtttgttttttcatttgaccaaattttggagaaatgtagcttGATATCAGTTTGTTCACCAGTGGATCCttcggtgaatgggtgccatcagaatgacaGACAGCTGATTAATCAGATGTCACGATAAATAAAGTAATCCATTCCACTCCAGTCCATTATCTTGTGACatgaaaagctgtgtttgtaataaacaaatacttCATTAAGatgtatttaactttaaaatattgaatcagTCCTCTTTACTGAGAAATTTACTTGCACCTTTTACAAGAACAGTTCTAAATAAtgaactattaaatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212934 lncRNA upstream 25614 5705540 ~ 5706835 (+) True G144130
TU212933 lncRNA upstream 47352 5684828 ~ 5685097 (+) True G144129
TU212929 lncRNA upstream 99598 5632041 ~ 5632851 (+) True G144126
TU212867 lncRNA upstream 192985 5538200 ~ 5539464 (+) True G144081
TU212861 lncRNA upstream 214513 5502033 ~ 5517936 (+) False kcnk12l
TU212949 lncRNA downstream 3328 5738465 ~ 5741905 (+) False LOC122326918
XR_006247429.1 lncRNA downstream 57727 5792864 ~ 5794604 (+) True LOC122326140
TU212961 lncRNA downstream 112804 5847941 ~ 5848570 (+) False G144152
TU212969 lncRNA downstream 194632 5929769 ~ 5930885 (+) True G144157
TU213061 lncRNA downstream 327287 6062424 ~ 6062680 (+) True G144212
XM_043220773.1 mRNA upstream 19605 5707122 ~ 5712844 (+) True pold3
XM_043222204.1 mRNA upstream 30039 5701472 ~ 5702410 (+) True LOC122326977
XM_043220954.1 mRNA upstream 34104 5697407 ~ 5698345 (+) True or61a1
XM_043222203.1 mRNA upstream 36538 5694961 ~ 5695911 (+) True LOC122326976
XM_043222202.1 mRNA upstream 45310 5686198 ~ 5687139 (+) True LOC122326975
XM_043222135.1 mRNA downstream 776 5735913 ~ 5739012 (+) True LOC122326918
XM_043222205.1 mRNA downstream 59625 5794762 ~ 5799702 (+) True LOC122326980
XM_043222096.1 mRNA downstream 187854 5922991 ~ 5925662 (+) True LOC122326891
XM_043221476.1 mRNA downstream 282287 6017424 ~ 6035864 (+) True LOC122326530
XM_043222207.1 mRNA downstream 306208 6041345 ~ 6043815 (+) True LOC122326982
TU212863 other upstream 221703 5508665 ~ 5510746 (+) True G144077
TU212862 other upstream 224154 5506555 ~ 5508295 (+) False sdhaf1
XR_006247443.1 other upstream 227225 5501103 ~ 5505224 (+) False qpctlb
XR_006247485.1 other upstream 706821 4947584 ~ 5025628 (+) False tnksa
TU212957 other downstream 59629 5794766 ~ 5796462 (+) False LOC122326980
TU212951 other downstream 62561 5797698 ~ 5799528 (+) False LOC122326980
TU212962 other downstream 112804 5847941 ~ 5849053 (+) True G144152
XR_006247546.1 other downstream 188283 5923420 ~ 5923495 (+) True LOC122327012
XR_006247543.1 other downstream 189152 5924289 ~ 5924361 (+) True LOC122327009

Expression Profile