RNA id: TU212951


Basic Information

Item Value
RNA id TU212951
length 832
RNA type TUCP
GC content 0.50
exon number 5
gene id LOC122326980
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5794762 ~ 5799702 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATCACTCTGGACGTTTTGGCCGATATGGGTCACGAGGAACTCAAGGAGATCGGCATCAATGCTTACGGACACCGTCATAAACTCATCAAAGGTATCGAGAGGCTGCTAGGAGGACAGCAGGGGGCCAACCCATATCTGACGTTCCACTGCACCAATCAGGGCACAGTTTTGATCGACCTGGCCGTGGATGATAAAGAGTTTCAGTCTGTTGAGGAAGAGGTACAAACGTAAACACTCGGAGCTCTTGGCTGTATCTTACACTTGTCTGCTTTGGCCGTGTGCGAGtgttgtttgggtttttttggttaCAGATGCAAAGCACAATCCGGGAGCACAGGGACGGAGGAAACGCAGGTGGCGTTTTCAGTCGATACAATATCATCAAGATCCAGAAGGTGGTGAATAAGAAACTGAGAGAGCgatacacacacaggcagaaAGAGATCGCTGATGAGAATCACAACCACCACAACGAACGAATGCTGTTTCATGgatctCCATTCATAAATGCCATCATCCACAAAGGATTTGATGAGCGTCATGCCTACATCGGTGGCATGTTTGGAGCTGGCATATATTTTGCAGAGAACTCTTCTAAGAGTAACCAGTACGTCTATGGCATCGGTGGCGGCACAGGTTGCCCCACTCACAAAGACCGCTCCTGTTACGTGTGCCACAGGCAAATGTTGTTTTGCCGTGTGACATTGGGAAAGTCCTTCTTGCAGTTCAGCGCCATGAAGATGGCCCATGCTCCCCCTGGACATCATTCTGTGATTGGCCGTCCCAGTGTCAATGGCCTGGCCTACGCCGAGTACGTGATCTACCGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247429.1 lncRNA upstream 3094 5792864 ~ 5794604 (+) True LOC122326140
TU212949 lncRNA upstream 55793 5738465 ~ 5741905 (+) False LOC122326918
TU212934 lncRNA upstream 90863 5705540 ~ 5706835 (+) True G144130
TU212933 lncRNA upstream 112601 5684828 ~ 5685097 (+) True G144129
TU212929 lncRNA upstream 164847 5632041 ~ 5632851 (+) True G144126
TU212961 lncRNA downstream 48413 5847941 ~ 5848570 (+) False G144152
TU212969 lncRNA downstream 130241 5929769 ~ 5930885 (+) True G144157
TU213061 lncRNA downstream 262896 6062424 ~ 6062680 (+) True G144212
TU213215 lncRNA downstream 663122 6462650 ~ 6462933 (+) True G144308
TU213228 lncRNA downstream 698173 6497701 ~ 6537141 (+) True G144317
XM_043222135.1 mRNA upstream 58686 5735913 ~ 5739012 (+) True LOC122326918
XM_043220893.1 mRNA upstream 62561 5732449 ~ 5735137 (+) True neu3.1
XM_043220773.1 mRNA upstream 84854 5707122 ~ 5712844 (+) True pold3
XM_043222204.1 mRNA upstream 95288 5701472 ~ 5702410 (+) True LOC122326977
XM_043220954.1 mRNA upstream 99353 5697407 ~ 5698345 (+) True or61a1
XM_043222096.1 mRNA downstream 123463 5922991 ~ 5925662 (+) True LOC122326891
XM_043221476.1 mRNA downstream 217896 6017424 ~ 6035864 (+) True LOC122326530
XM_043222207.1 mRNA downstream 241817 6041345 ~ 6043815 (+) True LOC122326982
XM_043221256.1 mRNA downstream 244608 6044136 ~ 6047775 (+) True LOC122326403
XM_043221258.1 mRNA downstream 251320 6050848 ~ 6058624 (+) True LOC122326404
TU212957 other upstream 1236 5794766 ~ 5796462 (+) False LOC122326980
TU212943 other upstream 63445 5732440 ~ 5734253 (+) False neu3.1
TU212944 other upstream 63445 5732440 ~ 5734253 (+) False neu3.1
TU212863 other upstream 286952 5508665 ~ 5510746 (+) True G144077
TU212862 other upstream 289403 5506555 ~ 5508295 (+) False sdhaf1
TU212962 other downstream 48413 5847941 ~ 5849053 (+) True G144152
XR_006247546.1 other downstream 123892 5923420 ~ 5923495 (+) True LOC122327012
XR_006247543.1 other downstream 124761 5924289 ~ 5924361 (+) True LOC122327009
XR_006247541.1 other downstream 125938 5925466 ~ 5925527 (+) True LOC122327007
TU213247 other downstream 734572 6534100 ~ 6535794 (+) True G144330

Expression Profile