RNA id: TU213321


Basic Information

Item Value
RNA id TU213321
length 299
lncRNA type read_through
GC content 0.55
exon number 2
gene id G144367
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6698992 ~ 6736633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTTCTGACGTAGCAGAGGTACAGGTAAGTCTTCTCTATCCTCCAGTCCGGGGGGATGTCTTCGGGCTTGTGGCCCTTCATGTGCTTCTGCATGGCGGAGAGGCTGGGGCAGTATTCCAGGCAGATGGTGCACTGGTACGGTGAGGCTCCGTTGTGGGTGCGCAGGTGTTTGATCATGGCCGAGTAGTCCCTGGAGCGCTGGTGGCAGAGCTTGCACTCAAACGGCTTCTCACCTGCACGGAGAACAGGAAATGTCAAGATTTTGCACGACATGTCAGGAGATTTTGTACTCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213290 lncRNA upstream 75416 6622464 ~ 6623576 (+) True G144353
TU213277 lncRNA upstream 91646 6606847 ~ 6607346 (+) True G144348
TU213276 lncRNA upstream 92962 6605481 ~ 6606030 (+) True G144347
TU213267 lncRNA upstream 114178 6582930 ~ 6584814 (+) False cfap300
TU213244 lncRNA upstream 165413 6532040 ~ 6533579 (+) True G144329
TU213315 lncRNA downstream 308428 7045061 ~ 7046792 (+) True G144363
XR_006247426.1 lncRNA downstream 323296 7059929 ~ 7066941 (+) False LOC122326110
TU213372 lncRNA downstream 323439 7060072 ~ 7067994 (+) True LOC122326110
TU213628 lncRNA downstream 1250987 7987620 ~ 8048741 (+) True G144587
TU213639 lncRNA downstream 1412762 8149395 ~ 8149616 (+) True G144598
XM_043222173.1 mRNA upstream 70222 6624931 ~ 6628770 (+) True alg8
XM_043220997.1 mRNA upstream 78849 6611003 ~ 6620143 (+) True pcf11
XM_043220948.1 mRNA upstream 88239 6607753 ~ 6610753 (+) True ddias
XM_043220949.1 mRNA upstream 90008 6607753 ~ 6608984 (+) False ddias
XM_043220822.1 mRNA upstream 105030 6587741 ~ 6593962 (+) False birc2
XM_043220788.1 mRNA downstream 172925 6909558 ~ 6915682 (+) True LOC122326099
XM_043220791.1 mRNA downstream 179523 6916156 ~ 6924635 (+) True LOC122326102
XM_043220793.1 mRNA downstream 311304 7047937 ~ 7051098 (+) True LOC122326105
XM_043220786.1 mRNA downstream 368239 7104872 ~ 7182842 (+) True LOC122326095
XM_043221808.1 mRNA downstream 893418 7630051 ~ 7863912 (+) True cadm1a
TU213247 other upstream 163198 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 773465 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 774631 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 775497 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 849939 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 1170831 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 1171422 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 1171422 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 1171422 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 1471170 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile