RNA id: TU213327


Basic Information

Item Value
RNA id TU213327
length 1098
lncRNA type read_through
GC content 0.42
exon number 2
gene id G144370
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6696709 ~ 7085923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGgtgaaaaacagagaaatctAATTTTTATTGAAAGGTAAAAGGGATAGAACAAAGGAGTGGAATATCAGACAACCTTACTGTACAAAGAAAGAATAAACAAGATCTTCAGCTAAGTGTAGACTGAAATAAAGTGGCTCCAGCAAATCTCTATAAAAGACTATTTTCACGTTGTCTGCTGCTCACGTGAAAAGAAGAACAAGGTAAAAGGGATAGAACAAAGGAGTGGAATATCAGACAACCTTACTGTACAAAGAAAGAATAAACAAGATCTTCAGCTAAGTGTAGACTGAAATAAAGTGGCTCCAGCAAATCTCTATAAAAGACTATTTTCACGTTGTCTGCTGCTCACGTGAAAAGAAGAACAAGGTAAAAGCTTTCACTCTGCCTTCACTGTCCTCTAACAAACCTGGCTTTAGAAAATGTCATCTATTTGATCTTTCCTGAGATCAAACACCTACAAAGACCGAAAGCAGCCAATCAATCTCCCTTAAAGGAATTCAGAACACAGTGAATATGTGTACCGTAGTGTGACAGAAAACGTCATTGtgcagtgaaaataaaatcCAGCTCAGCCTGAAGCAGAGGACAGGTGACCTTGTGACTGTGccttgattttttcttttctcccttGCCTCACTTCACGGTGACGACCGAGGTGCTGTGAATGGACTCCATGACGGCAGTCAGGCGGCTGCACAGATCATGGGGAGAGTTCCTCACTTTGGGGGGCTCCTTCAGGACCACCATTTCTGCAGAACAGTCCAGGACTCTAGGCAGGAATTCGCTGAGCTTTTCTGAACAGAATCTGATCAtacgaaaaacaaaaatgtgaacaACAAACTAAGCTAAgaattcatttgtaatttttttatatatgaaatctgGGGGAAAATAGCACACCATCCATGTCCTGCCCCAGGTAGGAGCACCAGCAACTCCTGATCAGCTCTATGATGTCCAAGTCCTCTTGACTGATGCTGTCTCTGACCATGAGGTGCATGCAGGGATAATGCAGTCATTCATGATGGTCACGGCCTCTGCCACGTCATTTTCATCTTGGCTTTTAAAGAGCGTGGCTGCGTTCTCATTCAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213290 lncRNA upstream 73133 6622464 ~ 6623576 (+) True G144353
TU213277 lncRNA upstream 89363 6606847 ~ 6607346 (+) True G144348
TU213276 lncRNA upstream 90679 6605481 ~ 6606030 (+) True G144347
TU213267 lncRNA upstream 111895 6582930 ~ 6584814 (+) False cfap300
TU213244 lncRNA upstream 163130 6532040 ~ 6533579 (+) True G144329
TU213628 lncRNA downstream 901697 7987620 ~ 8048741 (+) True G144587
TU213639 lncRNA downstream 1063472 8149395 ~ 8149616 (+) True G144598
XR_006247507.1 lncRNA downstream 1121898 8207821 ~ 8208941 (+) False LOC122326775
TU213688 lncRNA downstream 1133213 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 1144330 8230253 ~ 8249704 (+) True G144652
XM_043222173.1 mRNA upstream 67939 6624931 ~ 6628770 (+) True alg8
XM_043220997.1 mRNA upstream 76566 6611003 ~ 6620143 (+) True pcf11
XM_043220948.1 mRNA upstream 85956 6607753 ~ 6610753 (+) True ddias
XM_043220949.1 mRNA upstream 87725 6607753 ~ 6608984 (+) False ddias
XM_043220822.1 mRNA upstream 102747 6587741 ~ 6593962 (+) False birc2
XM_043220786.1 mRNA downstream 18949 7104872 ~ 7182842 (+) True LOC122326095
XM_043221808.1 mRNA downstream 544128 7630051 ~ 7863912 (+) True cadm1a
XM_043221984.1 mRNA downstream 822089 7908012 ~ 7908954 (+) False anapc13
XM_043221983.1 mRNA downstream 822091 7908014 ~ 7908954 (+) False anapc13
XM_043221892.1 mRNA downstream 1034149 8120072 ~ 8148977 (+) True jam3b
TU213247 other upstream 160915 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 771182 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 772348 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 773214 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 847656 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 821541 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 822132 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 822132 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 822132 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 1121880 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile