RNA id: TU213628


Basic Information

Item Value
RNA id TU213628
length 2576
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G144587
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 7987620 ~ 8048741 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgcgtTCACCTCATTAATTTCAGTTATTCATCATTCttgccttttttatatatatatatatatatatataagcaagcTCACACAAGtatactttcatttttttgtctcttttattatatcaaaatacaaaacatttttgaagcagggaaaaaaattacatggGTCTAGCATCTGAAAATGTCAATGAGCTGTACCAGTACTGAGTGATGTGAACCGAAGTGTTGAGGGTGAGGTCAGTATCTAccactgtagtttttttttttttttaatagttattcttattatcattttttctgTATGTATATACTTGGCAGCTCCACGTGAATCTATTCTATCTGAACTATACATGTAAAATCTATAATCTTAGTCTTGATGAATAAAGCAAgtgtcattcttttttttcttctttttctaaaaacaaacagaataatTTCCTTGCTCCACTGTGTCTGAGGTTTTGTAGCTGTTAGAGCTTTATAGAGAATGAAAAACTGTAGCACTCAAAGTATTGATTGAAACTCATAATGTAAGGGTAACCATTACAGAACGGTGCAATTAATAAGAGCACTGTACAAGAGAGGTAAACAGAGTTAACCCTATGGGTGCCGCTTCAAATTTCATTTATCTGAAACATGAAAGCACATCAAAACAATACAGCAAGGCTATTGAACAGCAGTGACAACAATGCAAATGAGATCAAatgatacaaaacaaaatggatTAGCACATTCCTTAATGTGTTGCTCAACATATCAGATAATAACATTCATCCGGTAATTAGAGTAAGAAATGACACTTTTGAAAAATTAGgtcacccccccaaaaaatgatCAGTTCTCAAATATCATTTGTATCAACGCGAATTAaactaaatgatgacaattttacattttgggggGAATCACACAAGCAAACCAtctgaaaagaagaagaaaatattagattttaaaaacaatgacgCGCTATAAAATCCTGGTGTTGTTTATGACCTCAGATTACAgtttgtttaattcattttagtttccGTGCAGGCAAATGTTGAGTGTACAGCATATGGATTGAAACCCACATCAATGGAAAGTAATGGAATATTAATGCCATTTAAATTGAATGAGGTCATATCGCGATGTGCAAATCTGCAAATGATTctacaaatgaaattaaaaagagaCTGCGATGGTGCAAATGCATTCCAGTACAACCTATGTCGAAGCTACCGAAAGGGTTAACATTGTCCTTATTAACAATattctaccaaaaaaaaaaaaaaaaaaattaaggaaacagaaaaacaacaaataaacatgtaaacTGCTAAAACTATGTCGCACCGTAATTCTAACCTCTTATAGTGTGTTTTACTGACTGCCAAGTGTCCGCTTCCAGTATATTCTAAATGCCGAAGCTCATCTCTAGTTTTTGGTAGCACATTCAGGTaacaaagtactttttttttttttctcaaggtATTCATGTGTGGTTTTCTCTCATTTACTCTGTACATCTACAGGAAAGATGGCGATAAACGTGAGGCGCAGAGTTACCTCTGGTCTGGACCACAAAATAGATCAGCAATAGCACCAAGTCATGATATGTTCAATGGTATGGCTGCTTACACACCACACTGAGGTCTCTAGAAAAGATTACGGTGATTGTTAGAATACACACCTACTACAAAAGCAGTTCGCATCATTTGCTATTCGCTAATGACCACACCTTGCTACCATGAGCATCTAACAGCAGAAAGAACATGTACTGTATTTCTCCATAAACAAGACAGCTAAATTGGAACAAATCTTCTTGGTTTTTCTCGCAGTACAAAATTAAAGATTCCCCAGTTAGCCTTTTATTACGTAACTATAAATAtctgttatttatacatacGGTTCACTGTCAAAATATTTCTACTGGTACAGTCTGTTGACTATAAGAATACAGAATACATACGTATATCTTGGACTGTGCTGCTATACATATTGCAGGTGCCACACGATCTACCCCCACAACAGACCGTCAAACAGACACAAGATCTCGCGCTGACCGGTCAAACAGCACTGTAGCCGGACCACCTTACAAAAAACTAAGAGATCAAATCCATCTCTGCAGGTATATTCGACTCAAAATTCAGCAACGGGTCATTTTTGATGCAAATTTCTGTCCAAAGTACCGACAATGGGAATACGGTTCACTTTACATAGATGAGATTCTCTAAAAATgagcatgaaataaaattcagCACATGCTTCATTTGGAAATGAGAATTGAGATTGAGAACGTAAGCAGAAATGTCactttaatatagtttttatcaTTCACTGTATATTGTgttgtcacatttttttaatatattttgtattgctTGAACCAGAGCTGTACTGTATGACAATGAAACGCACgggaaaaatggaaaaaaaatgatagatAACACCTTCCACTTTGGTTTGAGATTCTAATAGCATGTGTAACTTTTAATGTTATtccatatacatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213332 lncRNA upstream 896170 6702902 ~ 7091450 (+) False G144371
TU213327 lncRNA upstream 901697 6696709 ~ 7085923 (+) True G144370
TU213372 lncRNA upstream 919626 7060072 ~ 7067994 (+) True LOC122326110
XR_006247426.1 lncRNA upstream 920679 7059929 ~ 7066941 (+) False LOC122326110
TU213315 lncRNA upstream 940828 7045061 ~ 7046792 (+) True G144363
TU213639 lncRNA downstream 100654 8149395 ~ 8149616 (+) True G144598
XR_006247507.1 lncRNA downstream 159080 8207821 ~ 8208941 (+) False LOC122326775
TU213688 lncRNA downstream 170395 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 181512 8230253 ~ 8249704 (+) True G144652
TU213702 lncRNA downstream 265240 8313981 ~ 8316239 (+) True G144648
XM_043221984.1 mRNA upstream 78666 7908012 ~ 7908954 (+) False anapc13
XM_043221983.1 mRNA upstream 78666 7908014 ~ 7908954 (+) False anapc13
XM_043221808.1 mRNA upstream 123708 7630051 ~ 7863912 (+) True cadm1a
XM_043220786.1 mRNA upstream 804778 7104872 ~ 7182842 (+) True LOC122326095
XM_043220793.1 mRNA upstream 936522 7047937 ~ 7051098 (+) True LOC122326105
XM_043221892.1 mRNA downstream 71331 8120072 ~ 8148977 (+) True jam3b
XM_043222116.1 mRNA downstream 102362 8151103 ~ 8158831 (+) True zgc:171740
XM_043222117.1 mRNA downstream 102362 8151103 ~ 8158831 (+) False zgc:171740
XM_043221546.1 mRNA downstream 110359 8159100 ~ 8182749 (+) False dixdc1b
XM_043221547.1 mRNA downstream 110378 8159119 ~ 8182749 (+) False dixdc1b
TU213574 other upstream 78593 7908055 ~ 7909027 (+) False anapc13
TU213575 other upstream 78697 7907464 ~ 7908923 (+) True anapc13
TU213572 other upstream 78697 7908055 ~ 7908923 (+) False anapc13
TU213573 other upstream 78697 7908055 ~ 7908923 (+) False anapc13
TU213247 other upstream 1451826 6534100 ~ 6535794 (+) True G144330
TU213648 other downstream 159062 8207803 ~ 8211125 (+) True LOC122326775
TU213840 other downstream 519294 8568035 ~ 8568673 (+) True G144746
TU213880 other downstream 656520 8705261 ~ 8709686 (+) True G144775
unassigned_transcript_2520 other downstream 678604 8727345 ~ 8727426 (+) True trnas-gcu_33
XR_006247466.1 other downstream 1066844 9115585 ~ 9122111 (+) False rbm14a

Expression Profile