RNA id: TU213639


Basic Information

Item Value
RNA id TU213639
length 222
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G144598
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 8149395 ~ 8149616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGCTAATTGGTTTCGGATCGAAAGAGAGCTTCAATCAACGCGAGGTTGTTGCTAACGCCGCTTTTTCTCTCTTAACAGCGTTAGTCTTATAAACACGACTGGAGAAATCCACTTGTTACACCTAACAGCCTCCTCGATCGGGATCCGCGGGGCAGCGTGATCAGCGAGTTAACCCGAATCAGCTGCTCTGCTGGGTCATCGCTGCTGAGGGCTTCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213628 lncRNA upstream 100654 7987620 ~ 8048741 (+) True G144587
TU213332 lncRNA upstream 1057945 6702902 ~ 7091450 (+) False G144371
TU213327 lncRNA upstream 1063472 6696709 ~ 7085923 (+) True G144370
TU213372 lncRNA upstream 1081401 7060072 ~ 7067994 (+) True LOC122326110
XR_006247426.1 lncRNA upstream 1082454 7059929 ~ 7066941 (+) False LOC122326110
XR_006247507.1 lncRNA downstream 58205 8207821 ~ 8208941 (+) False LOC122326775
TU213688 lncRNA downstream 69520 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 80637 8230253 ~ 8249704 (+) True G144652
TU213702 lncRNA downstream 164365 8313981 ~ 8316239 (+) True G144648
TU213703 lncRNA downstream 167512 8317128 ~ 8317447 (+) True G144649
XM_043221892.1 mRNA upstream 418 8120072 ~ 8148977 (+) True jam3b
XM_043221984.1 mRNA upstream 240441 7908012 ~ 7908954 (+) False anapc13
XM_043221983.1 mRNA upstream 240441 7908014 ~ 7908954 (+) False anapc13
XM_043221808.1 mRNA upstream 285483 7630051 ~ 7863912 (+) True cadm1a
XM_043220786.1 mRNA upstream 966553 7104872 ~ 7182842 (+) True LOC122326095
XM_043222116.1 mRNA downstream 1487 8151103 ~ 8158831 (+) True zgc:171740
XM_043222117.1 mRNA downstream 1487 8151103 ~ 8158831 (+) False zgc:171740
XM_043221546.1 mRNA downstream 9484 8159100 ~ 8182749 (+) False dixdc1b
XM_043221547.1 mRNA downstream 9503 8159119 ~ 8182749 (+) False dixdc1b
XM_043221548.1 mRNA downstream 11398 8161014 ~ 8182749 (+) False dixdc1b
TU213574 other upstream 240368 7908055 ~ 7909027 (+) False anapc13
TU213575 other upstream 240472 7907464 ~ 7908923 (+) True anapc13
TU213572 other upstream 240472 7908055 ~ 7908923 (+) False anapc13
TU213573 other upstream 240472 7908055 ~ 7908923 (+) False anapc13
TU213247 other upstream 1613601 6534100 ~ 6535794 (+) True G144330
TU213648 other downstream 58187 8207803 ~ 8211125 (+) True LOC122326775
TU213840 other downstream 418419 8568035 ~ 8568673 (+) True G144746
TU213880 other downstream 555645 8705261 ~ 8709686 (+) True G144775
unassigned_transcript_2520 other downstream 577729 8727345 ~ 8727426 (+) True trnas-gcu_33
XR_006247466.1 other downstream 965969 9115585 ~ 9122111 (+) False rbm14a

Expression Profile