RNA id: XR_006247507.1


Basic Information

Item Value
RNA id XR_006247507.1
length 559
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122326775
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 8207803 ~ 8211125 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACTGGACAGCACCTTCTCTCTAGCTTATCTTTCTGGGGATTTGTTATTGTTGGCTGTTGTCTCATTTACATGCATGTCCACGCGATCCCTCTCTGTGAAGTGTTTACTGGAGCACTTCATTGATTCACTAGCCTTTGGAGCTCCAAATGTTCCTTCTCGTGGGGTTTATTTGGCCGGGTGAGCAGTCCGAAGCTCATgcgtcattaaaaataaatggcgAAAAATGATAGGGGAGCACGCACTGGATCGCAAGATTAATGAGAAAGCTCTCTCGGGCTACTGTTTACGCGAAGTCTGaattaaacacacttaaaagaCGAAGTCAATTCGTTTCACCACAAATGCCAGATATTTCACGTGAGAAAACTGTTTTTTCTTAAACGTGAATGAAAGACACGGGCGCGCGCAGGGAGTCTGACACAACTGTTTCCTGAGTCAACGGGATCGGGCTGCTATATCAGGGCCGTCGCAAAGGGATGACTGGAACGGATCCAAAGCGTAACGGATATTTCTAATCGGTTCTCTTGGACCTGTAAAGCTGGACTGTGAATAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213639 lncRNA upstream 58205 8149395 ~ 8149616 (+) True G144598
TU213628 lncRNA upstream 159080 7987620 ~ 8048741 (+) True G144587
TU213372 lncRNA upstream 1139827 7060072 ~ 7067994 (+) True LOC122326110
XR_006247426.1 lncRNA upstream 1140880 7059929 ~ 7066941 (+) False LOC122326110
TU213315 lncRNA upstream 1161029 7045061 ~ 7046792 (+) True G144363
TU213688 lncRNA downstream 10195 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 21312 8230253 ~ 8249704 (+) True G144652
TU213702 lncRNA downstream 105040 8313981 ~ 8316239 (+) True G144648
TU213703 lncRNA downstream 108187 8317128 ~ 8317447 (+) True G144649
TU213724 lncRNA downstream 110544 8319485 ~ 8321247 (+) True G144669
XM_043221543.1 mRNA upstream 4535 8183357 ~ 8203286 (+) True ddx10
XM_043221546.1 mRNA upstream 25072 8159100 ~ 8182749 (+) False dixdc1b
XM_043221547.1 mRNA upstream 25072 8159119 ~ 8182749 (+) False dixdc1b
XM_043221548.1 mRNA upstream 25072 8161014 ~ 8182749 (+) False dixdc1b
XM_043221544.1 mRNA upstream 25072 8161015 ~ 8182749 (+) True dixdc1b
XM_043221911.1 mRNA downstream 2447 8211388 ~ 8216313 (+) True si:dkey-183i3.5
XM_043221914.1 mRNA downstream 8034 8216975 ~ 8220955 (+) False si:dkey-183i3.6
XM_043222216.1 mRNA downstream 15901 8224842 ~ 8227856 (+) True LOC122327001
XM_043221232.1 mRNA downstream 21312 8230253 ~ 8232122 (+) True gng8
XM_043221230.1 mRNA downstream 23509 8232450 ~ 8235411 (+) True tmem45b
TU213574 other upstream 298794 7908055 ~ 7909027 (+) False anapc13
TU213575 other upstream 298898 7907464 ~ 7908923 (+) True anapc13
TU213572 other upstream 298898 7908055 ~ 7908923 (+) False anapc13
TU213573 other upstream 298898 7908055 ~ 7908923 (+) False anapc13
TU213247 other upstream 1672027 6534100 ~ 6535794 (+) True G144330
TU213840 other downstream 359094 8568035 ~ 8568673 (+) True G144746
TU213880 other downstream 496320 8705261 ~ 8709686 (+) True G144775
unassigned_transcript_2520 other downstream 518404 8727345 ~ 8727426 (+) True trnas-gcu_33
XR_006247466.1 other downstream 906644 9115585 ~ 9122111 (+) False rbm14a
TU214495 other downstream 2173048 10381989 ~ 10411338 (+) False LOC122326092

Expression Profile