RNA id: XM_043220748.1


Basic Information

Item Value
RNA id XM_043220748.1
length 4429
RNA type mRNA
GC content 0.42
exon number 7
gene id zmat1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1056331 ~ 1063140 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCTCCCCTTCATATTTTAGCTATTGCCATGTAGAGCTGTTTGGCATTTTAGCTTAATCTGCtacagttttgatttatttccaggttttaaaaaaatgtccgAGCTTGAAGCTAGTGTATCGTGTTCTCCGCAGTGTGCGGAAACAgatcaaatcaaaaatacagacgATATCAATCCAGAAACAGTACAAAACACTAACACCAATATTTCTCAGGTTGAAGAAGGGTGTCATAGCGACAGCAGTCTTCTCAAAGGCTTGTTGACAGATAACTTCTGTCACGTCTGTGAAGCAACCCTGCTTTACGAGTCCCAGAGAGTTTCTCATTATGAGGGGAAAAAGCATGCACAAAGAGTCAGGATGTACTTGCAGAACAAGAACGCTAAAACAAATAAGCCGAGCCAAGATTGTGAAGGCCTTTTGagaggTCTGTCTGCAGAGAAGTTCTGTGAGCTGTGCAACATGGTGTTCAGCTCTCCGACTGTGGCCAAGTCACACTATGAGGGTAAAGTTCATGCAAAGAACATGAGAAAAACCAATCCTGTTCCACCTGGAGCGCCCGTCCTGGAATCCACAATTTCTGAAGTCCTCCCGTCAGAGGCTGCTGCTCAAAATCAGATCAGTCTGGAGCAGGACACTTCAGGCTTGGGCGACCTAGAGGTCGATCTCAGCGACCCCAACAAGTACTGTACACTGTGCAGTGCTTCCTTTAATAACCCTTTGGTCGCCCAGCAGCATTACAGCGGCCGCAAGCATCAGAGGAACCAGGCCCGGCAAGAGATGCTGGATCAGATGGGGGAACAGTCAGAACACGtgagctCCCTGACTTGCCCGATCTGCTGTCTGACACTCAGCTCAATAGAGATGTACCAGGCACACATGCAGGGAAACAAACACTTTGTCAAAGAGAAGAAAGTTATTGAACTGTGCAAATCTCAGAAGAAAGTGTACGACTCCTTCCAGGATGAGTTGGCTGACTACATTCAGGTGCAGAAAGCCCGGGGACTGGATCCTAAAGCAGGGCCGGGCACCATAGGACAAGCAGGCAAAGGTTTGGATGAAAGTGTGAAAGAAGGTCCACACAAAACAGAAGAGATGCCTCAACCTGGTCAGCTGGTGCCACGTTTCCCGCCTCCGGCTTTTCCTCAACCTCACTGGCACCCACAGTTCCCGTCCCAGGTCAGTCAGTTTGGCTTTGGTATGAGAGGCCCTGCCCCACAATATCGTCCGGGATTTATGCCCCATGCCCGTCCTACTTTCCCACCTGGTCACCTTTATAAAAAAGGGAGGAGCCCTGAGTCATTCAGCTCCACCTCTGTCTCAGACTCCTCCTCCTACTCTAGCAGCAGTAGCGACAGCAGCAGCAGTTACGAcagcagagagaggaggagacgcaagaggaaaatgaaaaaGCGAGGGAAAAGTCGAAGAGACCAGGAGGAAGGGTCTGATACAGAacgaggagaaagaaaaaagagacgGAAGGGAGACCGGAGAGGAAGTGTAGAAGGAGAAGATGATAGAAAGAAATGGAAGGAGGGACGAAAAAGAGGGAGGAGCTCTAGTGAAGACGAGgaaagcagaaataaaagaagAGCTAGCAAGAAAAGTAGAAGGCACGGGGATGGACAGCATGCAAAGAGACGAAAGGAAGAGGAGATCTTGGAGAAACAAGGAGTGCACGAGGAACCAGAGGAAAAGATGGAGGAACATGTAGAGGTCAGGACAGAATCGAAAGAtggcaaacacaaacacaaaaaagagaagaaaaaaggaaaagagaagaTGAATCAAGACGACAACAGGACAGAGGAGGAAAGGCTCTGGGATGAAACGATTCTTGGTGTTTTTTAGAATTTCGATGATGGTCTGACAGTATTCTAATAAAACTGCACGGGACCCCAGAAAATCATTTTACTGGCATTTTCTGGGTCCTTCTCATTATTTATGCTTTCTGAAGAACTCTAAAGGCCTTTCTTTTATACAGAAACTCATCTGATTTCAATTCCTTTTTAAGGAATCAACAGTGAACATTTTGTCTTGATTTACTCACTCTCGTTTCAAACACACAtgacttctgtggaacataaaaataaatgtcaagaatgttcatgctgcttttTTCCACTGCAATAAATGCATACAGAATCTTTCAAcctccaaaaatgacaaaaaagtagtCAATATGACTTGTGCGCTATATTTCAAGTTTTATGGAGAGGTATAGATCAGTACTACGCTGAAGAAACTACCCTATATGCTGCACAAACTGCTATTGCAAGGTgcttttgtctcttttagaGCTAGACAATATCTATTCGCTTTCACAGTGTGGAAAAGAGCAACAGGAACATGCTGAACCtcaccttttgtgttccacagaagaaacgAAATGCAGGTTTGGAGTGACataagggtgagcaaatgatggtAATGTTCATTCCTCGAAACGCTCAGGACTACAGACTACTAGGATGTCTCgctaactttattatttttgatgtgtGATGGAAAAACACTACGTGAGCCATCCATCATGTCCAAGTGGATGTGTGCTTCAACAtgctttgatcaaataaacccAATCCCATTGTTTATAGCAGCAAAGGTTtagtatttattgtaaaacGTTTTctaaaaaagtctcttatgcgtgtacttttatttctgaattaattGAAGCGTTTCCAGTTTTACTCTCAAGGGGGCGTTGATTGCAAACGTACACACTACACTTTGGATCTGCTAGAAACCTTTCAGACTGTATCGCTCTTTGTTCAAGAAAGACACGAAAACAGCAATGAACAGTGAGAATAAAACGAAGTGCTGTCagaatatagaatattataaacatttgcCTGAATGAGAAGAGCTCGGCCTGCAGTCCAagtttttgttgcatttctgtgtttatgtgaaaGCGTAAGGCTCATTTGACGCAGCACATGctggaatatttttgtttgcaggTCTAACAGGTGCAGGAGTTGAATGAGGACACGATTGCTACTCTGTTGACCTCTTTCTTGCATAGAGCTGCATTTCCCTTTTTGTGAGTTATCACAATCATGCAATCATCCGTTTATTTAATGACTGTGCTGCTGAGCAGATTTCTCATGTCCCCATTAAAGAATCCTTAACTCGCTTTTGGATCACTTTCTGAGCGCTCAGGGAACATACCGATCACGTGAAGATGAATATGGATGTGGTTTGAAGGAAATAATACTTGAAATGCATTTACGTGTTGCTGGATGTAAAATGGGATGATGGCTCAGTCAAAAACGaccattttgtattttactaaCTCTAATGTTGCTCatgaaaatgatacaaaaaaaaatcataaacgttttgcactgtatttcaagcctttatgtgtttttgtttcataaacagtaaaaattctGATCCTTTAGATGCATAGGTTAGAAAGGGTTTGAAATTGTATCCACCTTCCAATTCCAAGCCAATTTGAAAATGTGAATGAACTATTGAAATTATAAAACGTTATGATACCTACATTTTATGGtgactttttgttattttaaagacatggcaaatgacacattttttaatgtattatatcaccaaggctgcatgaAGTTGATCAAATTTCAGTAAaactaatattgtaaaatattaatgcattttaaaagagtgtttttctattaaaacattAGCCTTctattcctttttttctccccgttttcaagtaatttatttccgtgatggcgaagctgaattttcagcagccaaatCTTTATTCATGATCCTGcgtaaataattttaatatgctgattttcctaatttaaaaaaatcgaaGAAACATAGCTTATGAATAACAACATGATTGTTTTgtgtaaactatccctttaatttgcatgcattggtgTTCTGCTAAGCATGTTCTGATCttcaaatgcatttgtattaaattgtgGATCCAACACCTGTAGCTTCTAAGTCAGCCTTTGTACTTCAGAACtatatgaactttttttttttccaagtcttTGTAACCGCAGAGTTGAAAGCCCTCCGCACACAAGCTCGTCGACAGACGCACTAAAGCGTTCTCTCAATCCCCCTGAGATCTCCTGTTTTCAAAGAATCGTGTGGTTCTCCTCCCTGTGTCTTTGTCGTACCCTCGACCCCCAAGACGTGTGCGTCTCCCACATCCTCCCCTCTTCACGACCCCTCCACGGGCCCGTGAGCCCCTCCAGCCCTCCTCAAGAGACGAGGGCCAATGAACACGATCTTTTAACACCTCAACTCGAAAACTCCCACACGAGCCCCCCTGAGCTTCAGGCTGCAGAGTCCCACACACTCAAAAACTTCATTAACTCAGCTTATCTAGATTGCGGAGTGGAAAACAAGTACGTTTATTTGTTTCGATTGCCTAAGTGAGGTGAACATTTTGGGCTTCAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247435.1 lncRNA upstream 6063 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA upstream 6106 1048521 ~ 1050225 (+) False LOC122326171
TU211038 lncRNA upstream 139368 916621 ~ 916963 (+) True G142866
TU210993 lncRNA upstream 244274 759275 ~ 812057 (+) True G142832
TU210980 lncRNA upstream 250225 735722 ~ 806106 (+) False alpk2
TU211143 lncRNA downstream 7221 1070361 ~ 1081301 (+) False LOC122326171
TU211152 lncRNA downstream 9128 1072268 ~ 1074041 (+) True G142941
TU211142 lncRNA downstream 14832 1077972 ~ 1081301 (+) True LOC122326171
TU211144 lncRNA downstream 19027 1082167 ~ 1083273 (+) True G142933
TU211177 lncRNA downstream 27103 1090243 ~ 1102107 (+) True G142954
XM_043220937.1 mRNA upstream 406 1050838 ~ 1055925 (+) False entpd2b
XM_043220936.1 mRNA upstream 406 1050841 ~ 1055925 (+) True entpd2b
XM_043221214.1 mRNA upstream 8320 1023625 ~ 1048011 (+) False grin1a
XM_043220927.1 mRNA downstream 1702 1064842 ~ 1068363 (+) True cd8b
XM_043220861.1 mRNA downstream 11109 1074249 ~ 1077136 (+) True cd8a
XM_043222107.1 mRNA downstream 53451 1116591 ~ 1131625 (+) True pcsk1
XM_043221532.1 mRNA downstream 76105 1139245 ~ 1152504 (+) True ell2
XM_043221457.1 mRNA downstream 89964 1153104 ~ 1155627 (+) False glrx
XR_006247444.1 other upstream 984 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 89969 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 89969 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 164873 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1170519 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1883712 2946852 ~ 2946923 (+) True trnaa-ugc_120

Expression Profile