RNA id: XM_043220786.1


Basic Information

Item Value
RNA id XM_043220786.1
length 4424
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC122326095
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 7104872 ~ 7182842 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAGCCGCGTCTGGCTGCCGTGCGCTGGTGCAGGTGCTCTATTTCATCGAGAGAGGATGCGAAAGGAAAGAAGGGGAGGGAAAGAATGAAGGGAACCGTCGGAGAAAAGTATGCAGGGCAGGAATAAAAGGGTATCAGCAGCTGACAGTGTGTCTAACGTCCAGGGGCTCGGCTAAGAATGATTTATTGAAAGGGGCACTTTGAGATATGATGAGGTTTCTCTCTGGTTGGCAATAGTACTATGATTTGGTATGTGGCCACTTTGATAGCAAGTGTATTCAGCACCAGAGGAACAGCTGCTCAAGGTGCCCACGGAGTCAGAGAAGAGCCCCAGTTTGTGACGGCCCGCGCAGGGGAGACCGTGATTCTGGGATGTGACGTGGCCCACCCACTCAACGGCCAGCCCTACGTGGTGGAGTGGTTTAAGTTTGGAGTGCCCATCCCCTTCTTCATCAACTTCCGCTTCTACCCTCCTCATGTGGACCCCGAATACGCCGGCCGAGCCAGCCTGCATGGCAAGTCATCTCTACGCATTGAGAGGGTTCCGGAAGACCAGGGCTGGTATGAGTGCAAGGTCCTGATGCTGGAACAACAGTACCACACCTTTCACAACGGCAGCTGGGTGCACCTCACAGTCAACGCTCCCCCAACTTTCACGGACACACCACCCCAGTATGTGGAGGCCAAAGAGGGTGGCAGCATCACTCTGAGCTGCACGGCCTTCGGGAATCCCAAACCTTCAGTCAGCTGGCTCAGGGAGGGAGATCCTGTACAGGACAGCAGCAAGTATAAGGTGAGTGATGGCAGCCTGACGATCGTTTCCATCAGCCGCGAGGACAGGGGAGCGTACACATGCCGAGCGTACAGCGAGCAGGGAGAGGCCGTCCATACCACACGCCTACTCGTCCAAGGACCCCCATTTATTGTCTCACCGCCAGAGAACATAACCGTAAACATATCCCAGGATGCATTCTTCACTTGTCAGGCTGAGGCGTATCCTGGCAACCTAACGTACACCTGGTTCTGGGAGGAAGATAACGTCTTCTTCAAGAAtgATCTGAAGCGCAGAGTGAGTATTCTGATCGACGGTTCACTCATCATCTCCCAGGTGAAACCTGAGGATGCTGGGAAATACACCTGCAGCCCGAGTAACAGCCTTGGGCGCCCACCTTCTGCATCAGCGTACCTGACCGTGCATTACCCTGCCCGTGTGGTAAACATGCCGCCCGTTATTTACGTGGCCATTGGACTGCCGGGGTACATCCGCTGCCCGGTGGATGCCAACCCGCCTGTCACTTCAGTGAAGTGGAAAAAAGACGGCCTGCCTCTGCGGATAGAGAAGTACCCTGGCTGGAGCCAAATGGAAGATGGGAGCATTCGAGTGTCTGAGGTGACAGAGGACTCTCTCGGCACCTACACCTGCGTGCCTTACAATAGCCTCGGTACAATGGGACAGTCCCCTCCCGCCCCTCTGGTGCTAAAGGACCCACCCAAATTTCTGGTGGTTCCTGGAGGGGAGTACAGGCAGGAGGCTGGTCGAGAGCTGGTCATCCCCTGTGAGGCAGAAGGAGACCCATTCCCCAACATTACATGGAGAAAGGTAGGGAAGCCCAGCAGAAGCAAGCACAACGTCCTACCGAGAGGCAGCTTACAGTTCAAATCTCTCAGCAAGGAGGACCATGGGGAGTGGGAGTGTGTCGCCTCCAATGTCGCCACGAGCATCACTGCCAGCACGCACCTCCTAGTAATCGGCACAAGCCCACACGCCCCCGCCAAAGTCCACGTTTCGGTCTCGACGACCTCGGCCAACGTCTCGTGGGAACCCGGTTACGACGGCGGCTTTGAGCAGACATTCTCAGTCTGGTACGGCCATGTGGTGAAGAGGGAGCAGTTAGGACCGCATGACTGGCTGTCCATGCCTGTGCCCAGCGGGCAGCACTGGCTCCTGGTGCAAGGCCTGGAGCCCGAGACGGCCTACCAATTCAGCGTCCTGGCCCAGAACAAGCTGGGGACGGGCCCGTTCAGCGAGGTCGTCACTGTGAACACACTAGTATTTCCTATAAGTACCCCAGAACCACTGGTGCTGCTTACCCCACCACGGTGCCTCACAGCCAACCGGACACAGCAGGGAGTCCTACTCACATGGATCCCTCCAGCCAATCACACGTCGCCAATTGATCACTACATCATGGAGTTCCGCCTCGGGGAGAGGTGGGATGTTCTTGATGATGCAATCCCTGCTGGAGAGACAGAGCTATTGGCTAGAGACCTGGTTCAGGAGGCCTGGTATGAGTTCAGAGTGATGGCAGTTATGGAGGACCTTGTCAGTGAGCCCAGTAATGTAGTGGGAGTCTCTAGCACAGACTACTTCCCGCCGCCTGAGGTGCCAGACGAGGGGCTGGCGCGGCCGGTGGTGGCAGGCATTGTGGCCACCATCTGTTTCCTGGCAGCAGCCATCCTCTTCAGCACGCTAGCGGCCTGCTTCGTCAACAAACAGAGACGGCGTAAGCTCAAGCGGAGACGAGATCCCCCTCTGTCTATAACACACTGCAGAAAGAGCGTGGAGACTCCGAGTCCTCTTACCCCTCTACCTGGCATAGAACCCTACTGGGAAGGCCAGGAAAGGAGCAGCTACAGGCCTCCGCCCTCCAGTCCTCTATCATCTTCTGGAAAGGTTAGTCCAGAAAGTGTCCGCTCCATAGGACCTCCTTCAGAATCCTCAGAGGATGGTTTGCGAGCCAAGAAGTTTCCTCAAAGTCCTGCCAAGGAGAAGGAGCTGTCTTTATACAAGAAGACCAAGAGAGCAATAATTAGCAAGAAATACAGCGTCTCTAAGCACGAGGCGGAGGCTACCACGCCAATCGAATTGATTAGTCGTGGCCCAGATGGGCGCTTTGTCATGGAACCTACAGATGCGGAAACTCCAGTTAAGGCAAGGCGCATCGAGGGCTTCCCCTTCGTGGAGGAGTCTGACCTCTATCCTGAATTTCGACAGTCAGATGAGGAGAATGATGATCCGGGGCCCATGCCGCCTATGATGGCTACCCTCAGACCCCATCAGATCTCGCCCATTTCTTCTAGCCAGGAGTCTTACTTGCAGCCCCCAGCCTACAGTCCCCGCTTCCAGAGGCCCATGGAAGGCATGACTATCATGGAAACTAGTCGACTCCAGGCTACAGGACAGATTCGTGGTGCTCCTCACTTCCGAGCCTTTTCCCATGGCCAGTTCTACAGCTACTTGGGAAGTCCAGGGGAACCTGAGCCTCCGCCTCCCTTCTACATGCCAGACACCAGCCCTCTCAGCTCAGTAATGTCTTCTCCTCCTTACCACCTGGAGGACCTTTTCGGTCATCCCACCATCCCGGAGGAAATCGGTGAGGGAGAGATTCAGCATTATGCAGTCTCTGGCTACACCCTTCCCTTGGCTCACCCCTCCACCTCACGCTCTCCAGACATCTGGCAGCGACCCGATTTTACCTTTGCCACAATCGAGGGTCCTCACTTTATTTTTCCACCCCCCCACCCTTTGCATCTTCATCCGGAACCTCCCCTTCCTCCCCCTCTTGTTCTTCCTCCTAGTGCACTCCAGCCCTCTGCCCTTCAAGTATCTCCGTACCCTGGTATCCTGCAGCTGGAGGCCCCAAAGAGCCGCCCAGGCAAGTCTCCCAGCAAGGTCAAGCCTCAGGGCCTTCCAGCCAAGCGTTTACCTATGCAAGAGGCACAGAGTCTAGGGCAGCTAAGACACACAAGCCACGGTATGGGTGTACCGGTATTGCCTTACCCTGACCCGGTGTCTCACATGGTTGGCCCAAGCTCGTTTGGAAGCCTGGATACGCGATGGTACGAGCTTACACCCAGGCTTAGCCCAAGGCAGCCCCGCAGGATGGAGCCCGGCATGGTAGTTCTACAGCCTTCCCGCCTCTCTCCTCTAACTCAAAGCCCGATTAGCTCTCACGAAGGCTCACCGGAGATTGTAGTGCGCCCCAGGCCCCGTCCCAGTGTCATCCAACCCCCGATCCCTCCTGAGATGTCTGAGATCACTCTTCAACCTCCTTCTTCAGCTAGTTTCTCTAGAAGgtcctccccctcctcctctcctgcTCAAGGCCAAGGCAGCCGAAGGGCAAGTCCCAGCTACCGATCCCACATGGCATTTGCCACCTCAGCAGCAAGCTATCCGTCACAGTCCCCTTCACCTCCTGTAGAAAGCAGCAACATTTTCGGGCAGATGCCAACTCAGAGGAGGACTGAGGAGGAGATCCTTCCGTCAGAACCCTCTCCACCCCAGTTATCAGCTTCAGGCTATCTGGGCAGCGTTGTTGTGACCAGGTCCTCTACACCGCAATAGAAAACGTCGAGGTGCACCAAGTGGCTCTGCAGGGTCTGAGAGGATAGAAGCACTGAGATATCAACGAGTGAAAAA

Function

GO: NA

KEGG:

id description
K22656 IGSF9B; immunoglobulin superfamily member 9B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213332 lncRNA upstream 13422 6702902 ~ 7091450 (+) False G144371
TU213327 lncRNA upstream 18949 6696709 ~ 7085923 (+) True G144370
TU213372 lncRNA upstream 36878 7060072 ~ 7067994 (+) True LOC122326110
XR_006247426.1 lncRNA upstream 37931 7059929 ~ 7066941 (+) False LOC122326110
TU213315 lncRNA upstream 58080 7045061 ~ 7046792 (+) True G144363
TU213628 lncRNA downstream 804778 7987620 ~ 8048741 (+) True G144587
TU213639 lncRNA downstream 966553 8149395 ~ 8149616 (+) True G144598
XR_006247507.1 lncRNA downstream 1024979 8207821 ~ 8208941 (+) False LOC122326775
TU213688 lncRNA downstream 1036294 8219136 ~ 8221572 (+) True si:dkey-183i3.6
TU213706 lncRNA downstream 1047411 8230253 ~ 8249704 (+) True G144652
XM_043220793.1 mRNA upstream 53774 7047937 ~ 7051098 (+) True LOC122326105
XM_043220791.1 mRNA upstream 180237 6916156 ~ 6924635 (+) True LOC122326102
XM_043220788.1 mRNA upstream 189190 6909558 ~ 6915682 (+) True LOC122326099
XM_043221901.1 mRNA upstream 377657 6722166 ~ 6727215 (+) True htr3a
XM_043221902.1 mRNA upstream 377657 6722166 ~ 6727215 (+) False htr3a
XM_043221808.1 mRNA downstream 447209 7630051 ~ 7863912 (+) True cadm1a
XM_043221984.1 mRNA downstream 725170 7908012 ~ 7908954 (+) False anapc13
XM_043221983.1 mRNA downstream 725172 7908014 ~ 7908954 (+) False anapc13
XM_043221892.1 mRNA downstream 937230 8120072 ~ 8148977 (+) True jam3b
XM_043222116.1 mRNA downstream 968261 8151103 ~ 8158831 (+) True zgc:171740
TU213247 other upstream 569078 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 1179345 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 1180511 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 1181377 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 1255819 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 724622 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 725213 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 725213 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 725213 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 1024961 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile