RNA id: XM_043220800.1


Basic Information

Item Value
RNA id XM_043220800.1
length 2600
RNA type mRNA
GC content 0.49
exon number 17
gene id odf2a
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1722853 ~ 1731673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACGTGTTGCTGTAGCTGGGTTCACCAGCTTCGGTTTGTTAACATATgctgaaacaaaataatagaTAGTATGTCCACAACGTGTTTAGTTTCTGGTCGAACAATTATTGCTGGGACGTCGTTAAACAGATATTCTAATCTTTGTTTGTATTCTTGACAACTGCAGCTTGGGCCTTTGTTAGGCTTGGTTTCTAGGGATACCGTTGCTATAGACCGAGTACTACATAACGCTGACCAAGGTCAGGCAATTTCCTCCAATCACGATCACGCACTTCCAACGAAACCTTTTGAATCAGCCAATCAAATGAAAGACCGATTACCCACCGGAAGAAAGAGGTTTCGAGATTCTGGGATGACAAGAAAGCTGAAGTAGTTCGCTACTATTTCAATGTACATTTTACCCTTATCGACGCTTGAATGTTTGTAGTTTCGCATGAGAAAGTCAACGAGAACAAGCTCTTCTTCCCCACCGCTGCACGTGCATGTGAACGAGACCACGCCTGTGCACGTGCATGTGAAGAAGAGCACAAAATGCAGCCCTACCAAGACAGCCCAGgttaaaacaaaaagtagcaTGCATCCTACTGCTAAGGTGAAGACGAGGGTCCCGTGGATCCCACCTGGCAAGGTCTCAACACGAGAGACATCGTATAAGTGGGAGGGGCCATCTCATCGTTTGGAGATAACACCTCCGCATGAACCAGAACGTTCCCATTCTCCTCTCCGAATAGAAGATCTCTCGACGGATGAAGAAGAGGCACTGCATGGACGCATCAATCAGTATGAGAGAAAGATTGACAGCCTTATGACAGAGGTCAGCTCTCTGAAAAATGAGGTAGAGCTTCGTAAGAAGGAGCAGCTGCTGGAGCGTCAGTCAGAGAGGTTAAGCGCATCACAGCGTGTCATCGCTGAGCAGGAGGAGGAGCTAGCAGAGGTCGCCCGGGAGCTGGAGGCCACAGAGCAGGAGAACTCCCGCCTACGGGAGTCCATGGAAAAAATGATGGAGGGGAATGATTTTGGGAGATTGGAGAGAGACAGTTTGCAGCCAGACAAGGATGTTCTACTCAGGAAACTGCTGGAAGCAGAGATGGACAGCAGTGCAGCCGCCAAGCAGGTGTCTGCCCTCCGTGAAACTGTCAGCCATATGTCCAGGAGTCCGAGTGTCAGTGAGAAAAAGATGTCGGGGTCAGATTCAACGCTCTTGACCCGACAGAAAGAGCTCTTGCTGCAGAAGCTGGAGACTTTTGAGAGCACTAACAGAGCCCTCAGACATCTTCTGAGAGAACAGCATAGTCGAGAGatGGAATCACTAAGACTCTTAGAGCAGAAAGACGTGCTTCTGAAAAAACTTTCTGATGTGGAGGCAGAAAATTCGCGTATTCTTGTAAAGCTTCaggacaaagacagagagattAACCAGCTCACGTCCTTGTTAGAAAGTGAAAAgGACAGTGCAAAGACCACCACTGAACTGTCCAAAGTCTTGGAGTCCACTCGAGCACATCTGCAGGGTCAACTCCGCAATAAAGAGGCAGAAAATAACCGTCTCAATGTTCAGATCAGGAATCTAGAGCGATCCATCAGTCAGCAGCAGGGGGAAGTAGAACACCTGCAGAATCAGTTCCATGACCTCAGACAGCAGGCGGAGGCTGATAAGGAGGCCCTGAAAAAAGCCACGCGGGCACAGAAACAGCGGGCACAGCGCAGTGAAGACACTGTGGGACAGCTCAGTGCCCAGCTCATTGAGATAGAAGCACAGTTGGCAGATGCTGTGTCAGCCGCAGAGAATTGGAGCAATCGACATGCAAAAGAGATGAAGGAAAAAGGACAGTTAGACATGGAGATCACGTTGTTGAACAGcCGTATTACAGACCTTACAGAACAGTTGCATGGGCAGGAAGAGAAAGCCCGAACAGAGAGAGATGGTCTTCTAGATCGCCTTCATGAGCTCAATACAGAGAGCACTACTATGCGCCTGGAGAACCAGAGCCTTCAGGCCACTTTTTCTGCCTTGGAAGAGAAGTTATCATTGTCCCAGTCTGAGGTCCAGCAGGTCAAAGTTTCAGTGAAGCAGTATGAGAGCTTGGTGGACAGCTATAAAGCCCAGGTTCAGAAGACCCGTGCCGAAGCAGATGAGTACTCTGCACGTATGCAGGTGGCTGAAAGCGAAGCCCAGGCTGTAAGAGACGAGCTAGACCAGGAGATCCAGAAGGTCAGGAAGCAGCTTCAAGGTCGTTTGGCAGAGCTGGAGCCGCTTCCCGAAGCTCTGAGACACGCTGAACTCCAGTTGCAGGAGGCTCATGAGAAAGAGCGCTTGCAAGAGAGAAGAAACACAGAGCTTGGCACCTCCATTGCAGAGCTACGCATTAAGGCGGAGCAACAGGGAAGTCTGGCTGAAATGTTGAGACACAAGAACATGTTGCTGCAAGAAGAAAACAAGCAGCTTCAGCACAAAATAGAGGGCCTTGAACGCTAGAGGAGGCTAACTCCCAAAATCGAGACCTCATCCAGGTAATTTCAAAACGTGAAGAAACTATTCATAGCAACCAGGTGCGTCTTGAAGAAAAGTCTCGAGAGTGCAGTATTCTGACTCGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211223 lncRNA upstream 476044 1241871 ~ 1246809 (+) True G142977
TU211156 lncRNA upstream 486698 1229548 ~ 1236155 (+) False G142943
TU211157 lncRNA upstream 486698 1229548 ~ 1236155 (+) True G142943
TU211158 lncRNA upstream 486698 1229548 ~ 1236155 (+) False G142943
XR_006247463.1 lncRNA upstream 493798 1227998 ~ 1229055 (+) True LOC122326311
TU211465 lncRNA downstream 32179 1762382 ~ 1762837 (+) True G143139
TU211466 lncRNA downstream 33273 1763476 ~ 1763743 (+) True G143140
TU211472 lncRNA downstream 34558 1764761 ~ 1765095 (+) True G143144
TU211478 lncRNA downstream 109129 1839332 ~ 1963020 (+) True G143149
TU211483 lncRNA downstream 143558 1873761 ~ 1944503 (+) True G143153
XM_043221064.1 mRNA upstream 445240 1258176 ~ 1277613 (+) False kiaa1328
XM_043221065.1 mRNA upstream 445240 1258205 ~ 1277613 (+) False kiaa1328
XM_043221066.1 mRNA upstream 447538 1258176 ~ 1275315 (+) True kiaa1328
XM_043221085.1 mRNA upstream 467802 1248114 ~ 1255051 (+) True aqp7
XM_043221089.1 mRNA upstream 481059 1240385 ~ 1241794 (+) False mlnl
XM_043221462.1 mRNA downstream 3530 1733733 ~ 1761705 (+) True sptan1
XM_043221468.1 mRNA downstream 3530 1733733 ~ 1761705 (+) False sptan1
XM_043221463.1 mRNA downstream 3530 1733733 ~ 1761705 (+) False sptan1
XM_043221464.1 mRNA downstream 3530 1733733 ~ 1761705 (+) False sptan1
XM_043221469.1 mRNA downstream 3530 1733733 ~ 1761705 (+) False sptan1
TU211224 other upstream 493808 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 566711 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 566711 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 667506 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 503456 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1216649 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1585553 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1588032 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1884957 3615160 ~ 3615231 (+) True trnam-cau_115

Expression Profile