RNA id: XM_043220821.1


Basic Information

Item Value
RNA id XM_043220821.1
length 2620
RNA type mRNA
GC content 0.45
exon number 9
gene id birc2
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6585713 ~ 6593962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAAAGCAGGAAATTCTTTGGAAAGTCCCACAAATTCCGAGCTCGACGTTATACCGAGTCATTGCAAGAAATGGTTACTAAGAACTACTGACCACTGACTCGAGCTAGACTACCAACATCAACTCCGGTTCCTGCATCATAGGGGGAAAGAGTTCAGACCTTCTACCTCAACCTTTAATCTGTTCAAGagatcatttaatttttttaataagattatGCTTTCTGTCATGGACGACTAGACACCCTTCATGGGGTGTCCAGCAGAGAGAAAGGCTTGAATGGGCACACCCTGTGgtcacatttttaatgcttttatgttGGATTTCATATTGATTTCATGTTAGTGCCTATAGAAACCAccatttgctatttaaaaatgtgttttgttcagTGTAGCTGTAGTGTAGTTCTTAGTGATCCAGGGTGAgctttttagaagaaaacactTGTTTTATGCATCACATGATGTTCATGTTGTCATGCCATCATGTTGTTTACACAACAAGGACCATCAAAGAAGGGTTTCTTCACAGAACTGGTGAATGTTGTaaggttttggttttttttttttacgcaaaaGGTATACTCCatcctctgaacacacacaggGTATTCAAGCCTTTCTCTCTGCTGGACATCCCTttcctaaacttttttttgaaatggaaattatACAAAATAGTGCTTTTCTGAGGGGTTTGTGTCGCAATAGTGCTCCTGCAGATTTACAGTACGATCATTCGTCAGAACTCTTTCGTATATCCACATATGCTAAGTTCCCCACCACTGCAGCGGTGACAGAGAGGAGTCTCGCTCGAGCGGGTTTTTACTACACTGGAGTAGGTGACCGTGTCCAGTGTTTCCGCTGCAATGTGACCGCTGACAACTGGCAGTCCGGCGACTGTCCTGCCGAGCGCCACAAACAGCTGTCTCCCAACTGCAGCTTCATCCAGAGTTTACCTGCCACCGCAAACCTCCTGTCGTCTTCGCACTCAGCCTTTTCCCCACTTCGTAATGTAGCCATCCTGCAGCTGTCCGCCCCTGCAACCACAGGAGTGTCGACTACTGCGGCATCATCTTCAGGCCAAACAGAGGAGCAGGTGGGTTACCTAAACATGGGATTCAGTAACCTGGCACCATCCAGTCCTATTTCCTCGCGTGGAGTAGAGGATATGTCTCACCAGAGACCTCCGGCTTGTCACAATCCCAGTATGCGTCGAGAACAAGAGCGCCTTGACACATTTCAGAATTGGACCCTTGCTACAGTAACTCCAGCTGAGCTGGCCAAGGCTGGTTTCTACTACCTTGGCCAGGGTGACAGGGTGGCTTGCTTCAGTTGTGGCGGCCAGCTTAGTAATTGGGAACCAGGAGACAGGGCAGTATCTGAGCACCAGAGGCATTACCCCAACTGCCGCTTTGTTCGAGGTGACCGTGCAGATAACGTGCCGTTATCTAGTGGAGGCCTGTCCAATGTATCCAACTCTGCAATGCAACAGTGTGAAGAACGACTGCTCACGTTTGTGAACTGGCCCTCGAGAATACCTGTTCGACCAGACCAATTGGCTAAAGCTGGGTTTTACTATGTTGGTCGAAACGATGATGTGAAGTGCTTTTGTTGTGATGGTGGACTCCGATGTTGGGAATCTGGCGACGATCCATGGGTAGAACACGCTAAGTGGTTTCCGAGATGTGAATACCTGTTGCAAGAAAAGGGCCAAGAATTTGTTCATCAGATTCAAGCAAGATTTCCAAGACTATTTGAACAGCTTTTGACTAATGGAGACAGCAACTCAAGAGAATTTGTTGATCCACCTGTTGTCCACTTGGGTCCTGGAGAAGATCGTTCAGAAGATGCAGTGATGATGAACAATCCAGTAGTGAAGTCCGCATTAGAGATGGGATTTGAACGTACCCTGGTGAAGCAAACAGTCCAGAGCAAAATTCTTACAAGTGGAGAGAATTACAAAACCGTACAAGAATTGGTTTCTGATTTACTAAGTGCAGAAgatgagaagagagaagaggagcGAGAGCTTCTTGCTGAGGAGATGGCATCAGatgGTTTTACTTTCCTTAAGAAACATCATGCTGCTTTGACACAGCGTCTAAAAAGTGTCCAGAGCTTAATGGATCATCTTCTGGAGGAGAATGTCATCTCACAGAAGGAGTATGACACTATTCGTAATTGCACTTCAGTCAAGCAGCAGACAGGGCAGCTCATTGATTTAGTCCTGTCGAAAGGAAATGCTGCAGCAGAGGTTTTCCGCAACTGGATTAAGAAGAATGACGTGTACCTGCTCAGAGAATTGATGgCCCAGACAAATGAAGCTGCATCACCGAGTCAAGATCTTTCAGATTTGCCTATGGAGGAACAACTGAGGAGACTTCAAGAGGAGCGCACATGCAAAGTTTGCATGGACAAGGAGGTCAACATTGTCTTCATACCTTGTGGTCACTTAGTGGTGTGCAAAGAGTGTGCGCCTTCTTTACGCAAGTGCCCCATATGTAGAGGATTGGTAAAAGGCACTGTCCGTACTTTCCTATCATAAAAAAACCTACTAAACTAATAACAATTCGTATGTTTgtctaattaaaacaaataaaaaaaatttaactccG

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213267 lncRNA upstream 899 6582930 ~ 6584814 (+) False cfap300
TU213228 lncRNA upstream 48572 6497701 ~ 6537141 (+) True G144317
TU213244 lncRNA upstream 52134 6532040 ~ 6533579 (+) True G144329
TU213215 lncRNA upstream 122780 6462650 ~ 6462933 (+) True G144308
TU213061 lncRNA upstream 523033 6062424 ~ 6062680 (+) True G144212
TU213276 lncRNA downstream 11519 6605481 ~ 6606030 (+) True G144347
TU213277 lncRNA downstream 12885 6606847 ~ 6607346 (+) True G144348
TU213290 lncRNA downstream 28502 6622464 ~ 6623576 (+) True G144353
TU213282 lncRNA downstream 43161 6637123 ~ 7018763 (+) True G144351
TU213327 lncRNA downstream 102747 6696709 ~ 7085923 (+) True G144370
XM_043221758.1 mRNA upstream 679 6582746 ~ 6585034 (+) True cfap300
XM_043221701.1 mRNA upstream 17690 6546071 ~ 6568023 (+) True arhgap42a
XM_043221702.1 mRNA upstream 17690 6546071 ~ 6568023 (+) False arhgap42a
XM_043221703.1 mRNA upstream 17690 6546072 ~ 6568023 (+) False arhgap42a
XM_043221705.1 mRNA upstream 17690 6546073 ~ 6568023 (+) False arhgap42a
XM_043220948.1 mRNA downstream 13791 6607753 ~ 6610753 (+) True ddias
XM_043220949.1 mRNA downstream 13791 6607753 ~ 6608984 (+) False ddias
XM_043220997.1 mRNA downstream 17041 6611003 ~ 6620143 (+) True pcf11
XM_043222173.1 mRNA downstream 30969 6624931 ~ 6628770 (+) True alg8
XM_043222211.1 mRNA downstream 121043 6715005 ~ 6720847 (+) True htr3b
TU213247 other upstream 49919 6534100 ~ 6535794 (+) True G144330
XR_006247541.1 other upstream 660186 5925466 ~ 5925527 (+) True LOC122327007
XR_006247543.1 other upstream 661352 5924289 ~ 5924361 (+) True LOC122327009
XR_006247546.1 other upstream 662218 5923420 ~ 5923495 (+) True LOC122327012
TU212962 other upstream 736660 5847941 ~ 5849053 (+) True G144152
TU213575 other downstream 1313502 7907464 ~ 7908923 (+) True anapc13
TU213572 other downstream 1314093 7908055 ~ 7908923 (+) False anapc13
TU213573 other downstream 1314093 7908055 ~ 7908923 (+) False anapc13
TU213574 other downstream 1314093 7908055 ~ 7909027 (+) False anapc13
TU213648 other downstream 1613841 8207803 ~ 8211125 (+) True LOC122326775

Expression Profile