RNA id: XM_043220861.1


Basic Information

Item Value
RNA id XM_043220861.1
length 1089
RNA type mRNA
GC content 0.39
exon number 6
gene id cd8a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1074249 ~ 1077136 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACggggagatttttttttttttgcatccttttaGATGTTTTGTTCCTGGTATTGTAGAAGAGCTGAAAGCCTGTGCTGAGAACTGAAGAAATGTATCAAATATACATtggattttgtgtgtttttgtcccTTTTCGATggGGGCTTTGCAGAAAAGGTCTACCAAGAAGGAAAGGAGGCAACAGTCAACTGTGACACCAAACTGCCCGGCGTCATTACTTTCTGGTTTAAGATAAACAGAAGTGGTGCAAAGTATTTGTTCACTGTTAAAGGCACAGACATAAGGAGTGATGTTGAGGATAAGGAAAAATACAAAGTGAATAATAATGGCAAAGTTAGTTTGACTATTCGGTCTTTCAAGAAAAAGTCAGACAGCGGTTTGTACTCCTGTGCATCCATGAACAACAATCAACTCAGCTTTGGAGAGCTGACAGAAATGAAAGGAGAACCAGATCCGACGACACCACCTCCGAAAATTGATCCCAAACCAAAAATTACAACACCAGCAACTACGACGAAATCCAATTGTAACTGTCCATCCAAAGACCAGAGGCTCAGCATCAACTGTGAGACTTGGATATTGTCGTCTTTGGCCTCTGGTTGCGGTGTTCTCCTCATTCTGCTGATCTTCACAATTTTGTACTGCAACCGTTTAAGAACAAGACGATGTCCCCACCATTACAAAAGACAACCCAGACCTGCTGGCCACGCAAAATTGCCCAACAATCACTTCTAACTCCAGTACAGACTCAGGAAATCCAGCGCTGCTTAAAGATGTCTTTGCGTGAAGTTCCTCTCACCGTGCAAAGTTAAAAGCAGTTGCTTCTTTCACGATTATTCAGACCGTGCAACCTTAAATCTGCGTCTTTCGCacagaaaatattcaaaacataacTATTTCTTTTccagaacgttttttttttccaaacagccAATGTGTCTTAGTATtgattacagttacatttattacattgacAATAAtcataatgtgtttttcatgTTAATCTGATCCtggtgaaatgttttgttttgcttcaatGTAGACTTATTAAATGGGccttattaaagcattttaagcttaaaaatca

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211152 lncRNA upstream 208 1072268 ~ 1074041 (+) True G142941
XR_006247435.1 lncRNA upstream 23981 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA upstream 24024 1048521 ~ 1050225 (+) False LOC122326171
TU211038 lncRNA upstream 157286 916621 ~ 916963 (+) True G142866
TU210993 lncRNA upstream 262192 759275 ~ 812057 (+) True G142832
TU211142 lncRNA downstream 836 1077972 ~ 1081301 (+) True LOC122326171
TU211144 lncRNA downstream 5031 1082167 ~ 1083273 (+) True G142933
TU211177 lncRNA downstream 13107 1090243 ~ 1102107 (+) True G142954
TU211189 lncRNA downstream 28349 1105485 ~ 1105817 (+) True G142963
TU211190 lncRNA downstream 29610 1106746 ~ 1106952 (+) True G142964
XM_043220927.1 mRNA upstream 5886 1064842 ~ 1068363 (+) True cd8b
XM_043220748.1 mRNA upstream 11109 1056331 ~ 1063140 (+) True zmat1
XM_043220937.1 mRNA upstream 18324 1050838 ~ 1055925 (+) False entpd2b
XM_043220936.1 mRNA upstream 18324 1050841 ~ 1055925 (+) True entpd2b
XM_043221219.1 mRNA upstream 26238 1023627 ~ 1048011 (+) False grin1a
XM_043222107.1 mRNA downstream 39455 1116591 ~ 1131625 (+) True pcsk1
XM_043221532.1 mRNA downstream 62109 1139245 ~ 1152504 (+) True ell2
XM_043221457.1 mRNA downstream 75968 1153104 ~ 1155627 (+) False glrx
XM_043221456.1 mRNA downstream 75971 1153107 ~ 1156140 (+) True glrx
XM_043221455.1 mRNA downstream 103319 1180455 ~ 1184070 (+) True nudt2
XR_006247444.1 other upstream 18902 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 75973 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 75973 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 150877 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1156523 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1869716 2946852 ~ 2946923 (+) True trnaa-ugc_120

Expression Profile