RNA id: XM_043220870.1


Basic Information

Item Value
RNA id XM_043220870.1
length 1017
RNA type mRNA
GC content 0.40
exon number 3
gene id ddt
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2784473 ~ 2786135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCGTCTCTGTCCTTCAACCAATCAGAGGAAGCGGTGTATCACAAGGAAGCAGAGCCACAACGGGTCATTCTCACGCTAGTCACCAGCAGCAACTACTATAATGCCGTTCATAAACGTAGAAACCAATTTACCTGCAAGCAAGTTTCCAGAAGACTTGTTGAAAAGACTGTGCACTACATTGGCTGCAGCTTTGGGGAAACCGGAAGACAGGATGAATCTGGTGGTGAAGGCTGACCTGCCGATGATGATCGCGGGGTCCAGCTCCCCGTGTTTGTTGATGTCCTTGTCTGCCATAGGAGTGACTGATACCGCGGAGAAAAATAAGGAACATAGCGCCAAAATCTTCCAGTTTCTAACAGGAGAGCTTGGTCTTAGCGATGATcgTATTTTGATATTGTTCTACCCTCTGGAACCATGGCAGATTGGAAAGAAAGGAACAGTGATGAGCTTCTTATAAggcttctttttttgtgtgtgattccTGTTTGGGATTCAACTAGCTGGACATGCGTTGCTCCTGGGCGATAGGACCGGTTGTTCTTAAGAATACGAATATTTCCTGATCTTCTTGAACAGTAgactgtgatttaaaaaataatcactttactaagataaatataaaatgcattcagcGTTTTGATGGGAAATCAATATATCGAATGTCTATTTTTAGACAATAAGGAAAATTAAAGTTATATTGTATAACTAATTGTATGAACTGCTCGTTGTTAGTCAACTTTCCTGAGAAGGTGCCATATTCAACACATCTACGGGTCAAATCAGACCATAGTATCCAGCTTACAAAAACCATAGAAATATCCATAATCGTGTAGTCGGCTCAAAGAGTGAGTTTTGATTTGTCGCATTACTATTTTGATTTGCATAGCACAGAGTAAAAGTGcacacaaaatgtctttttctcaCCGAATTTATCATCAGCTGTGTTTGTCTAGTACGTGGATTTagaaatttgataaaaaattaaaccgaaaataaacaaacattcttGAATAAA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048839 inner ear development biological_process

KEGG:

id description
K10028 DDT; D-dopachrome decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211774 lncRNA upstream 241166 2487403 ~ 2543307 (+) True G143385
TU211725 lncRNA upstream 294273 2426489 ~ 2490200 (+) True G143349
TU211736 lncRNA upstream 380383 2402747 ~ 2404090 (+) True G143356
TU211734 lncRNA upstream 384404 2399072 ~ 2400069 (+) True G143354
TU211715 lncRNA upstream 446003 2336781 ~ 2338470 (+) True G143340
TU211921 lncRNA downstream 14595 2800730 ~ 2801348 (+) True G143465
TU211940 lncRNA downstream 42979 2829114 ~ 2830356 (+) False gnrh2
TU211960 lncRNA downstream 76637 2862772 ~ 2863017 (+) True G143491
TU211980 lncRNA downstream 144127 2930262 ~ 2937617 (+) True G143509
TU212075 lncRNA downstream 529042 3315177 ~ 3315473 (+) True G143578
XM_043220869.1 mRNA upstream 448 2782348 ~ 2784025 (+) True chchd10
XM_043222163.1 mRNA upstream 31620 2744887 ~ 2752853 (+) True smarcb1b
XM_043221533.1 mRNA upstream 127713 2631096 ~ 2656760 (+) True LOC122326563
XM_043221534.1 mRNA upstream 129571 2631096 ~ 2654902 (+) False LOC122326563
XM_043221535.1 mRNA upstream 157120 2620164 ~ 2627353 (+) False LOC122326565
XM_043220867.1 mRNA downstream 509 2786644 ~ 2789093 (+) True gstt1b
XM_043220862.1 mRNA downstream 3372 2789507 ~ 2793545 (+) False p2rx4a
XM_043220864.1 mRNA downstream 3373 2789508 ~ 2793545 (+) True p2rx4a
XM_043220863.1 mRNA downstream 3373 2789508 ~ 2793545 (+) False p2rx4a
XM_043220866.1 mRNA downstream 7553 2793688 ~ 2800500 (+) False idh3b
TU211695 other upstream 547278 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1555428 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1628331 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1628331 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 1729126 1050838 ~ 1055347 (+) False entpd2b
unassigned_transcript_2518 other downstream 160717 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 529621 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 532100 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 829025 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 915294 3701429 ~ 3704397 (+) False G143650

Expression Profile