RNA id: XM_043220917.1


Basic Information

Item Value
RNA id XM_043220917.1
length 1377
RNA type mRNA
GC content 0.45
exon number 7
gene id rtn2b
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5524580 ~ 5530203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGACCAACCCCTTCCCGCTGACAACGCCAGGATGGCCAAAAAAAGCCCAGAGGGTTCGTGGAGTGCTGGGAGGAGAGGGGGTTTGGTGTGGAAGCAGCAGAAATGGCCAGCAAAGTGTTGGATCTGTTATACTGGAGAGATGTGGGGACCACCGGGCTGGTGTTTACAGGTTTGGTTGTGGGTTTGGCTTGTTTGTTCCAGCTCAGTGCCATCACGGTCCTCTCCAACCTTGGTTTAGGCATCATGGCCTTCACTCTCCCTGTGTGCTTGCTCTACAAAGCCATGACGCTGGTCCGCCTCAATGATGGATCTCATCCTTTTCAgtCATATTTGGATGAGGACGGTACGCTGACAGATGAGGACACAGTTCGCGTAGCGGAACAAATCGTTCTGCTGATTGCTACGGCTGTCACCGAGTTGAAGAGGCTGTTCTTCATCGATAGCATCATGGACTCAGCGAAGtTTGTTGTGTTCCTGTATCTGTTGACTTATGTGGGGATCCAAGCCAACGGTCTCACGCTGTTGATGAGTGGTGTGATATGTGCCTTCTCTTTGCCATTGTTGTACAGACTTCAACAGGAAAGGATCGACAAGATTGTCAAAGCAGTCAAAACACTTGTAGAAAAAGGCACCGAAATAGTTGATCTTGTGATTTCACTGGCCAAACCTCCACCAGCCCCAGCCCCAGCACCTTCCCCTGCCCCCACAGCAAAACATAAACAGAAGACTAAAtgaagaggagggagagagatggGGGTGAGGAGAAGTAATGTGGAGTACACTGAACAAACAAAGTCTTACGCTGCAGCTGTAGCCCTGTGAGTTCAGCAGGGTCGGGGGTTTGGGGGTTATGAATGAGCGTTATGTTTTACAGTACGTTTCTTACGGTGCTAGGAGATTCTTCAATAGGTCTTCTGAAAAGAATTAAACGGGCTTCTTCAGTCAAGAGAAGTCTAGGTGTACGTCTAATGTGTTCATTTAACTCAAACTGTCAAACGgctgtgtattatttataattattggTTCATTTTGCCTGACGAGGCTTTTTTTCTACTGATTTTCATAGAAAAAGTTGAACCTAGTTACAGTTGCTAGTACATTTTAGTCCACTAGAGGGTATAATGAGACCGTACAATCACAGCAGATCTGGGTCAGGACAGCATGTTGCAGAAACTCTGTCAAgtaaatttgttttgaaatgacaaTTCCCAGTGGGGCTGTGCATATAATTtgggttttattatttaatacttaatGTTTCAAATTACAGAGCAATTCAAAACTAATTTATAAGTCACTTTGTCATGTTTTGCCTGCCTGGCTTTGTACGTCTTTTGTGCAACATGACCCCCAGTAAACACttgttttcaatttta

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212861 lncRNA upstream 6644 5502033 ~ 5517936 (+) False kcnk12l
TU212722 lncRNA upstream 149658 5366192 ~ 5374922 (+) True G143990
TU212747 lncRNA upstream 196175 5327230 ~ 5328405 (+) True G144007
TU212653 lncRNA upstream 372691 5151557 ~ 5151889 (+) True G143937
XR_006247500.1 lncRNA upstream 410296 5111482 ~ 5114284 (+) True LOC122326722
TU212867 lncRNA downstream 7997 5538200 ~ 5539464 (+) True G144081
TU212929 lncRNA downstream 101838 5632041 ~ 5632851 (+) True G144126
TU212933 lncRNA downstream 154625 5684828 ~ 5685097 (+) True G144129
TU212934 lncRNA downstream 175337 5705540 ~ 5706835 (+) True G144130
TU212949 lncRNA downstream 208262 5738465 ~ 5741905 (+) False LOC122326918
XM_043220717.1 mRNA upstream 7037 5511956 ~ 5517543 (+) True kcnk12l
XM_043221725.1 mRNA upstream 16187 5506546 ~ 5508393 (+) True sdhaf1
XM_043220934.1 mRNA upstream 18147 5501104 ~ 5506433 (+) False qpctlb
XM_043220935.1 mRNA upstream 18147 5501105 ~ 5506433 (+) True qpctlb
XM_043221315.1 mRNA upstream 24987 5489878 ~ 5499593 (+) False LOC122326433
XM_043220902.1 mRNA downstream 93680 5623883 ~ 5626040 (+) False b9d2
XM_043220903.1 mRNA downstream 93693 5623896 ~ 5626040 (+) True b9d2
XM_043222051.1 mRNA downstream 96805 5627008 ~ 5631309 (+) True tgfb1b
XM_043221967.1 mRNA downstream 116239 5646442 ~ 5647335 (+) True LOC122326807
XM_043222197.1 mRNA downstream 122106 5652309 ~ 5653238 (+) True LOC122326971
TU212863 other upstream 13834 5508665 ~ 5510746 (+) True G144077
TU212862 other upstream 16285 5506555 ~ 5508295 (+) False sdhaf1
XR_006247443.1 other upstream 19356 5501103 ~ 5505224 (+) False qpctlb
XR_006247485.1 other upstream 498952 4947584 ~ 5025628 (+) False tnksa
TU212943 other downstream 202237 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 202237 5732440 ~ 5734253 (+) False neu3.1
TU212957 other downstream 264563 5794766 ~ 5796462 (+) False LOC122326980
TU212951 other downstream 267495 5797698 ~ 5799528 (+) False LOC122326980
TU212962 other downstream 317738 5847941 ~ 5849053 (+) True G144152

Expression Profile