RNA id: XM_043220934.1


Basic Information

Item Value
RNA id XM_043220934.1
length 2543
RNA type mRNA
GC content 0.43
exon number 8
gene id qpctlb
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5501103 ~ 5506433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGTAAGTACAGAAGGGACCCGCCAGAGCGAGCTGCGCAGATCGCTGTCCTGCTCTGTCTCAATAACATCGACTGCAGAACTGAGAATACGATTATTTACAGGCTGCATCGTCAAGATGCATGTCAAGGACGAAACAGAGCGGCGTTCGTGATGAATGTTCCCCAGACTCAGTGCTCTCGTCGATCAGCACTATGAGCTGCTCGTTTCTGTTCATTTATCTGACAGAGCGGCGGAGTGCCTGTGCCAGTCCCGGACTGCTGCTGAAGATGAACAGCATACGGTACAAAGCGGCGACTGTCAGGTGGAACTGTTCCGTCGCGCGCTGTGACCACGCGCGCATGTGCCGCCTGCGCCTGCTGCTGCTGTGCTTGTGCGTGATGGTGGCGATGACATTAACACTGGCAGTGTCACTATCTAACCACCAAACCATAGAGTATGATTTGTCTCCTAAACCCCCTGACCTATTCAAAGACAAGCTGAATCACCAGCCAGGTAAACCCACTGTTGCCCAAGTGAAGTGGCTCATCTCCCAGGTGAATTGGGAAAGACTATGGTATTCCCATCTGCGTCCCATTCTCACTGAACGCCAGCCAGGAAGCCGTGGCAGTCGGTCCGTTCGAAAACACATCTTTTCTCGTCTGGATTCTCTTTCGGCGGGCTGGTCTGTAGAGGTGGACTCCTTCATCTCCGAAACCCCTCGTGGCCCTGTTAGCTTCTCTAATGTCCTGGCCGTGTTGGACCCAATGGCTCCTCGCCGACTGCTACTGGCTTGTCACTATGACTCCAAGTTTATACCTTCAGATCCTAGTGAACCAAAGAAGGTGTTTGTGGGCGCCAGTGATTCGGCCGTGCCTTGTGCTATGATGCTGGAACTGGTCACCGCTTTGGATCCacacctcaaaaagcacaagcAGCTGatgTCCAGGGTGACCCTGCAGTTAGTGTTCTTCGATGGAGGAGAAGCTTTCGAGCAGTGGTCTCAGACAGACTCGCTATATGGTTCACGCCACCTTGCAGACTCCATGTCTCACATTCCTCACCCACCGGGTTCTGAACAAACCACACTGCTGAATGCTGTGGATCTCCTCGTTCTTTTGGACCTTATTGGTGCTCCTGATCCCATGTTTGTGAATCACTTTAAGAACACAGCGCGCTGGTTTGACCGCCTTATCGCTGCTGAGAAGAGACTTCATAATTTGGGGCTCCTGTCTTCCCATCCCAAAGAGCAGACATATTTCATGAAGAATGTGAATATGGGTCCAGTTGAAGATGATCACACTCCTTTCCTTGAGAGAGGAGTTCCAGTGCTGCACATAATCGCTACACCATTCCCTTCTTTCCTGCACACATTGGAGGACACAGGGGACAAGGTTCACAGTCACACTGTGGAGAATCTCACCAAAGTCCTTGTGGTCTTCCTGGCTGAGTATCTACGGCTCTAGGATGCTATAATATTACATCCAACCACATCCATTGTGGATCGGTCTATACCTCAGCTGCACTGCTTTAGGATATCTAATATCAGTGACTGTTCTCAGAGATACATAACGTACTGTATACTCTCAGGCTGCCATTCTATATCCTGACATATGCTTACCGTTGGACATGTTAGTCAATCGGTATCGTGCCTTCAGATAATTGTGCTATTTAGTACTGCACTGTAtagacaaaataatattatctgTGCCAAAAAAAGGTTTACATATGTTTAGTCGTATATATAATAACTGTGCAATAAAATCAATAGAATGCAAAGTAGATACTTCAAGCTCAGGAATGGATGTGAACCTGATGCTATGTAAGAGATTATTAAACTATGCACCACAGTCAAGCTCTATAATGCTACAACAGTTCTGATAAACCTCTATTTAATCTCGCAATAATTTTCTCAAGTAAGCAGTCTGTAATCTCTAGTAGCTAAATGTTCAATCACATGTTAGTCTagataatatgatttttttttttttttttttacagagaatGAAATGCACacttaaatggcaaaaaattcTTACTTGACTAGACTGGTAAGCAAATGACTTCAGACTTTTCCAAATGAGAAACTATTTAGAtctacaaaattattattattattattattgtctcaGAAAagaagcaacattttttttagataaaaaaatgaatactaatTTCTCAGTGGGcattacagaaaaacaacatatcTCTTGTAGTGAATACAGTAAGTTGCATAAAAGATGTCCTTTGTCATGTGAAACCCGGTATACTTTCAGAATAAAGTAtgtaatttgtcatttaaaatgtgtaaattgtGCTAAACAAACTAAACCACAGCatgtaaaaagtgtttaaatcagAACATGGACTCTAACAAAAGGACGTACTGTAGACTTGAGACTTAAACTTGACCTTGAAAGACTCAAGAAAAAAGACTAGTGAAAAAAGATTCGAATATGTGAACGCGTctgttttattcattgattttcagaatttttcagTTGTAGATATGGTATGGACGGGTCTTATATTCGATGTCTAAATAAAGAAGGAACATGAAATCTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212722 lncRNA upstream 126182 5366192 ~ 5374922 (+) True G143990
TU212747 lncRNA upstream 172699 5327230 ~ 5328405 (+) True G144007
TU212653 lncRNA upstream 349215 5151557 ~ 5151889 (+) True G143937
XR_006247500.1 lncRNA upstream 386820 5111482 ~ 5114284 (+) True LOC122326722
TU212636 lncRNA upstream 394878 5103857 ~ 5106226 (+) True G143926
TU212867 lncRNA downstream 31767 5538200 ~ 5539464 (+) True G144081
TU212929 lncRNA downstream 125608 5632041 ~ 5632851 (+) True G144126
TU212933 lncRNA downstream 178395 5684828 ~ 5685097 (+) True G144129
TU212934 lncRNA downstream 199107 5705540 ~ 5706835 (+) True G144130
TU212949 lncRNA downstream 232032 5738465 ~ 5741905 (+) False LOC122326918
XM_043221311.1 mRNA upstream 1511 5489878 ~ 5499593 (+) True LOC122326433
XM_043221312.1 mRNA upstream 1511 5489878 ~ 5499593 (+) False LOC122326433
XM_043221315.1 mRNA upstream 1511 5489878 ~ 5499593 (+) False LOC122326433
XM_043221313.1 mRNA upstream 1511 5489878 ~ 5499593 (+) False LOC122326433
XM_043221318.1 mRNA upstream 11342 5482487 ~ 5489762 (+) True itpkca
XM_043221725.1 mRNA downstream 113 5506546 ~ 5508393 (+) True sdhaf1
XM_043220717.1 mRNA downstream 5523 5511956 ~ 5517543 (+) True kcnk12l
XM_043220917.1 mRNA downstream 18147 5524580 ~ 5530203 (+) True rtn2b
XM_043220902.1 mRNA downstream 117450 5623883 ~ 5626040 (+) False b9d2
XM_043220903.1 mRNA downstream 117463 5623896 ~ 5626040 (+) True b9d2
XR_006247485.1 other upstream 475476 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other upstream 475476 4947584 ~ 5025628 (+) False tnksa
XR_006247451.1 other upstream 590599 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 770223 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 791663 4705201 ~ 4709441 (+) True btc
TU212862 other downstream 122 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 2232 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 226007 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 226007 5732440 ~ 5734253 (+) False neu3.1
TU212957 other downstream 288333 5794766 ~ 5796462 (+) False LOC122326980

Expression Profile