RNA id: XM_043220942.1


Basic Information

Item Value
RNA id XM_043220942.1
length 2347
RNA type mRNA
GC content 0.41
exon number 8
gene id stom
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3737381 ~ 3748407 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGGGGGAGGGGGGGCTGAACCTCACTCAGAGCCCTGTCTGTCCCGTGAAGAAAAACACTACAGGGAGGCGATCAACTACTGGAAGCGGTCAAGATATCTGCTCCATATCAACCCTGAATAATTCAAAGATATCTCCTACGATGGAAGACGGCAGGGAAACAGCTGCGATGAGAGAGCAAAAACGGAAAGATCGACAAATAGATCGGCAGTGTCACACAGTTGATGATACTAAAGCCTTGGAGAATACGGACAGTGACATTGGCTTGTGTGGTTGGATCCTGGTGATTTTCTCCATTCTGCTCACGTTGCTCACCCTGCCTCTCTCCATATGGATGTGCATTAAGATAGTGAAGGAATATGAAAGGGCAATTATCTTTCGCCTGGGACGCATTTTACGAGGAGGAGCCAAAGGACCagGTCTTTTCTTCATCTTGCCGTGCACAGACAGCTTTATCAATGTGGATATGCGCACCATCACCTTTGATATCCCCCCTCAGGAGGTGCTGACAAAGGACTCCGTGACCGTGAGTGTAGATGGTGTGGTCTACTACCGTGTGCAAAATGCAACGCTGGCAGTAGCCAACATCACCAATGCTGATGCAGCCACTCGTCTGTTGGCACAGACCACTCTGAGGAACGTGCTGGGTACAAAGAACCTGGCAGAGATCCTGTCTGACCGGGAAGAAATTGCCCACAGTATGCAGtCCACACTAGATGATGCCACAGATGACTGGGGTATTAAAGTAGAACGTGTGGAGATTAAGGACGTCAAACTGCCCCTTCAGCTCCAAAGGGCCATGGCAGCAGAGGCTGAAGCAACCAGAGAGGCCAGAGCTAAGGTGATAGCCGCTGAGGGAGAAATGAACGCGTCACGAGCACTGAAGGAGGCATCTCTGGTGATCGCAGAGTCGCCTTCTGCTTTGCAGCTGCGCTACCTTCAGACCCTCAACACCATCGCAGCGGAGAAGAACTCCACCATCATTTTCCCGCTGCCTATTGACATGATGCAGTCCTTTGTGAAGCACTGAACTAAGAGCCACATAAAGCCACCCCCCCcccccacatacacacacacatacaagacGCATCCATGCAGAGATGAACAGACTGATGTTATATAACAAGCACTCATGTGAGTATAATGTACAGCCGGGTCCAGACGTCTGAGTCCACACTGAATTCTGGTGTTCAATtttgaaaactcaaaaactaagAAGCATCATAACGTGAAGTGAAGAAGAAATACGTGAGGTTGTATTTGTCCCTTATCAAATAAGTGAAAATTGTTCGTTTTAATAGGTGAAGACGTAACTACGGATAGCCAGATGTTCAAAATGCGTGTGGGATCATATCATATAATTTCATAGAACGTGTTTATCAAGCTTTACACAAATTTGTTGAAATACAGATGAATTCGGTATCAAATTGTTATTCTGATAATGTGCTGTATTAGGAAAATGAAAGATGGAAACAATTTCGCTAGCGGTCTCATTTTTGGACCCTGCTGTACACTGATGCATGATCTGTAGATGTTCCTAGTAAAGACATGTTCACTCAGTTTGATGGAAATACAAACAatatgaaagttaaaaaaatatataaataaggccgtttttaaagaaatctcaTTGTTGCTTtgtattaaactttttaatgcatACCAAGTGAATAGGccttacaaattaaaattgtacaatttctCTGGTTGTTACAAGAAAGTGGAGAGATACAGACTGTGGAGCTGGTTCTTTTTAGTTACTGAATATGTTTTAGGCACATGTAAACTAACCTACTTGATTACCAGACAGGTGATAAAGCGTATAAAGACTATGTGAATAGCATCAGGTGTCATAACATGAAAGTGACATCAGTGCTTATTGTGCCTACCAGTTTTTCTCGTTTTCTTGAACCTTTATTAACGCTGACTGTCAATATTAAAGCCTTAAGCCATATCCCTTTCAATTATTGAATTAATATGTACAGGTTTACATGATgttggttgatttttttttttttttttttttttttaaacagcaatgaATTTATACATCCattaatattacacattaatattttattgcttgGGACTGTTTAAGGTTATAACTTCATTTTGCAATGTTTATGTTGTCATCATGTATCAGTCCATTACAATTCTAGAAGTAGTTGTTCATTCTGTCATTTAACTGATGTATGCCAAATATGACATTGTTGCTTTGTCCAACTGACTTTTATGtacattgtaatgtttttgtttgcgtaTTTCTGATGTGTGGTTTTCCCATTTCCTTTAGTAAATCATGATGTGTAATCTTTCTCATGACTAAGTACATAAACTCTTTAccttg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212176 lncRNA upstream 127331 3608919 ~ 3610050 (+) True G143638
TU212097 lncRNA upstream 244794 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 244816 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 244816 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 400692 3336261 ~ 3336689 (+) True LOC122326852
TU212203 lncRNA downstream 3192 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 14925 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 55051 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 171326 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA downstream 172673 3921080 ~ 3921279 (+) False LOC122326258
XM_043221479.1 mRNA upstream 103206 3617039 ~ 3634175 (+) True tsc1b
XM_043221608.1 mRNA upstream 134901 3544243 ~ 3602480 (+) True bcr
XM_043221609.1 mRNA upstream 134901 3544243 ~ 3602480 (+) False bcr
XM_043221006.1 mRNA upstream 194643 3514033 ~ 3542738 (+) True atp2a2b
XM_043221151.1 mRNA upstream 231794 3503222 ~ 3505587 (+) True arpc3
XM_043221653.1 mRNA downstream 38352 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA downstream 38354 3786761 ~ 3918707 (+) False rxraa
XM_043221650.1 mRNA downstream 38355 3786762 ~ 3918707 (+) False rxraa
XM_043221652.1 mRNA downstream 38358 3786765 ~ 3918707 (+) False rxraa
XM_043221654.1 mRNA downstream 78830 3827237 ~ 3918707 (+) False rxraa
TU212191 other upstream 32984 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 32984 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 32984 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 122150 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 417502 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 358394 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 384029 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 460853 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 832644 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 833511 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile