RNA id: XM_043221006.1


Basic Information

Item Value
RNA id XM_043221006.1
length 5778
RNA type mRNA
GC content 0.48
exon number 20
gene id atp2a2b
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3514033 ~ 3542738 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACCCTTCTTCATCTGGAGTGACGTCCAAACAGGGTCAGCTGATCCAAACTGACGTGACGAAGAAAAGTCAAAGGAAGAAACGGGATTTCCGGAGTCCGCGCAGCCAATGAGCGCATTCCACATGCGGACAGCGAGAGCGGTGCATGCGGATCAGGAGAGCGGCAGAGCGGCGACACGCGATTGGTGCTGATGGTGCTAGAGCTGCGAACACCGGCAGTGTGCTGCGGTCCACGGGAATGAGCCGAAAGACTAGTTAAGGGCTTCGTTTGGTAACCTAGCGCATCGTGAGGACAGCGGGACTCCCAGCAGGCATCGATAAAACTTAAAAACCGAGAACGACCAGCGAGTTTGCGATGCGCGTTGTGTAATTTTTGCTCGAATCAGTCCGGGTTCGTAACTTTTCTTCTCCTTAAACGCCCGAACCGCACAGTTAACGTCGGGTTTGATCGTGTGCCGTTTTTCTGAGGTCACTACGGTTGTTTTTGGATCAAGTTTTTCGTGGGTCCGAAGGTCTTGGGAGTCAGGACCGAAGGCTTTGAAGGAGCCCGCTTGTGTGGGGGGTTGCGAGTCCGTTCATAATCGGCGTGTCCGTCCGTCCACGATGGAGAACGCGCATACGAAAACCGTGGAGGAAGTTTACAGCTTTTTCGCCGTGAACGAGAGCACGGGGCTCGGCCTGGAGCAAGTGAAGCGTCAGCGGGAGAAATGGGGACCGAACGAATTGCCTGCGGAAGAGGGAAAATCGCTGTGGGAGTTGGTTGTGGAGCAATTTGAGGATCTCTTAGTTAGGATTCTTCTCCTGGCAGCTTGCATATCTTTTgtaCTGGCCTGGTTTGAAGAGGGAGAGGAGACCATCACAGCCTTTGTGGAGCCTTTTGTAATATTACTAATTCTTATAGCCAACGCCATTGTAGGTGTCTGGCAGGagagaaatgcagaaaatgCCATTGAGGCCCTCAAGGAGTATGAGCCCGAGATGGGCAAGGTCTATCGCCAGGACAGGAAGACCGTACAGAGGATCAAAGCCAGGGACATCGTACCCGGGGACATTGTGGAAGTTGCTGtGGGTGACAAAGTTCCTGCTGACATTCGCTTGACTTCAATCAAGTCAACGACCCTGAGGGTGGACCAGTCCATTTTAACAGGAGAATCTGTGTCAGTGATAAAGCATACAGACCCTGTCCCTGACCCTCGTGCTGTGAACCAGGACAAGAAGAACATGCTCTTCTCTGGTACCAACATTGCTGCAGGTAAAGCAGTAGGCGTAGTGGTCGCCACAGGTGTGAACACTGAAATTGGCAAAATCCGTGACGAGATGGCATCCACGGAGCAAGAGCGCACGCCGCTGCAGCAGAAACTGGACGAGTTCGGCCAGCAGCTCTCCAAGGTCATCTCTCTCATCTGCATCGCTGTGTGGATCATCAACATCGGACACTTCAACGATCCTGTTCACGGCGGATCGTGGATCCGCGGGGCCGTGTACTACTTCAAGATCGCCGTTGCTCTAGCTGTGGCCGCCATCCCGGAAGGCCTGCCCGCCGTCATCACCACCTGCCTGGCTCTGGGCACCCGTCGCATGGCCAAGAAGAACGCCATCGTACGCTCTCTCCCCTCCGTGGAGACCCTCGGCTGCACCTCCGTCATCTGCTCGGACAAGACCGGCACCCTCACCACCAACCAGATGTCCGTTTGCAGGatgTTCATTGTTGATCAGGCAAATGGAAACAACTGCTCTCTCAAAGAGTTTACCATTTCCGGCTCCACATACGCCCCTGATGGACAAGTGTTTCATGAGGGTAAACCTGTGCGATGCTCCCAGTATGACGCTCTGGTTGAAATGGCCACCATCTGTGCTCTGTGCAATGACTCGTCTCTGGATTACAATGAGGCCAAAGGTGTGTACGAGAAGGTGGGTGAAGCCACAGAGACTGCACTCACCTGCTTGGTGGAGAAAATGAACGTATTTGACACGCAACTGAAGGGCCTTTCCAAGGTTGAGAGGTCGAATGCTTGCAACTCGGTCATCAAGCAACTGATGAAGAAGGAATTCACACTGGAGTTCTCCCGAGACAGGAAGTCCATGTCGGTCTACTGCACTCCCAACAAAGCTCACTCCTCCATTGGCAAGATGTTTGTTAAGGGTGCTCCAGAGGGAGTGATTGACAGATGCACGCACATTCGTGTAGGTGGGAACAAGGTTGCACTGACAGCAGGCATTAAAGAGAAGATCATGTCTGTGATCCGGGAGTACGGCACAGGACGTGACACACTCCGCTGTCTTGCTCTTGCCACCCGAGACAACCCATTGAGTAAAGAGAGCATGGCACTGGAGGACTCAAGCAGATTCATTGAGTATGAGacggACCTGACCTTTGTGGGATGTGTGGGCATGCTGGATCCGCCCAGAGCTGAGGTGGCAGCTTCCATCAAACTTTGTCGTCAAGCGGGCATCCGAGTCATCATGATCACGGGCGACAACAAGGGCACGGCTGTCGCCATCTGTAGGCGGATTGGAATCTTTGGGGAGGACGACGATGTGTCACGAATGGCCTACACTGGCAGAGAGTTTGACGATCTGTCTGCTGCCGCCCAGCGAGAGGCAGTGCTCACGGCCCGTTGCTTTGCCCGTGTTGAACCATCTCACAAATCCAAGATTGTGGAGTTTCTGCAGTCCTACGATGAGATCACTGCCATGACTGGAGATGGTGTAAATGATGCACCTGCTCTGAAAAAGGCTGAAATTGGCATTGCTATGGGGTCAGGCACAGCTGTGGCTAAGACTGCTTCTGAGATGGTCCTGGCTGACGATAACTTTTCCACCATTGTGGCCGCTGTGGAAGAGGGTCGAGCCATTTACAACAACATGAAACAATTCATCCGCTACCTCATCTCCTCAAATGTCGGCGAGGTGGTCTGTATTTTCTTAACGGCAGCTCTGGGCTTCCCCGAGGCTCTGATTCCAGTTCAGCTTCTGTGGGTGAATCTGGTGACCGACGGTCTGCCTGCGACTGCGCTGGGCTTCAACCCACCCGACTTGGACATCATGAGTAAACCCCCTCGCAATGCCAGAGAACCTCTCATTTCTGGATGGCTCTTCTTCAGATACCTGGCCATTGGCTGTTATGTGGGTGCTGCTACTGTAGGTGCTGCTGCGTGGTGGTTCATTGCTGCTGAAGATGGGCCCAGAGTCACCATCTATCAACTGAGTCACTTCCTTCAGTGTGCACCAGACAACCCTGAGTTTGAGGGTCTAAAGTGTGAAGTGTTCGAGTCTCCCTATCCCATGACTATGGCGCTGTCTGTACTAGTCACCATTGAGATGTGCAACGCCCTCAACAGTGTTTCAGAGAACCAGTCTCTGCTACGCATGCCCCCCTGGGAGAACGTGTGGCTGCTTGGAGCCATCTGTCTCTCCATGTCCCTCCACTTCCTTATCCTTTACGTGGAGCCACTGCCGATGATCTTCCAGATCACCCCGCTGAACTTGACCCAGTGGCTTATGgtgttgaagatctccctgccTGTCATCTTGCTGGACGAAGTGCTCAAGTTCGTGGCCAGAAACTACCTGGACAAGCCCAAAGACCTGGACAATCCCAAGGGCAAGGCCTGCTCGCTTAGCACCTGCACTGAGGGCATTTCCTGGCCCTTCGTGGCTCTCTCACTCCCCCTGGTGCTGTGGATCTACAGCACTGACACTAACTTGGCCGAAATGTTCTGGTCTTGACTGAAATGAGTACAGATGTGTGTAGATAGTGTGTacgtgtgtctgtatgtgtggtTGTGCGTTTAAAGTGTGCCTCCGCAACAGAGAATGTGTACGAGAAGGACAGGATTAACTCAAAAATAACCGTGATATAGaaatataacctttttttttttttttttttaacatgtccAGTGGGGATTGAGGAAACCATACAAACCTGAAGTCTTCAAGTATTAGCGACCattggtttatttttgttattgcatttttttaatcatttgtttaatGTCTTATTTCAAACCATTAATATCAATTATGATGATATCAAATTTGTTTTGGCTCCAAATTATGTTTAAATGGCTGAATGGAGGGGGAAAGGTGCTTGTGTACAGACATTTAACACTATTTTATGCAATTGTtcatttgttgttatttgttcAATTTGCTAACAGAGCAGAGTGGGTagggcagaaagagagagatcaaGACAGAACTGTTTACTTACGTTTACCTTTGTGTCTTCGCCGTGAACATCGCTCAGAGCCAATGGACAAGCACAGTGTTTCAAAGCAGCATGGGAAAGAGAGTGCGGGACTGAATGTTTGAATGCTTCACGGTCAAATCCTCAGACGAAAGCTGCATGTTCtgtattttgcatgcattttgtgtggTTTTTCCACTTATGATTTGTACCTGTATGTCTTTCCTGTAACAACTTCCATTTTATGGGTATACATTGTGTTTCCACTATTACATGACACTTTTGATTAGTAAAGCCAGTCTTTCTGCACTAGGCAGAGTACAGCTACCTCAGGACTGTCAGATTAGACTCTCTCTGGTTGCTCCCCCCCCCACTTAGCTTTACACCGCTTGTACACATTAATGCATGAGGTGCGCCTCTATTTGATGATAAACAGAACTCAGATTCTTTTGGCCCTAACTAATCtcttaagtttttttgtttgtttgtttttcactgtattttataaCTGATTGAACTTGCATTAACTTAATTTagtggttttgttttggggCAGGGGTGGGTTGGACAAAAGATGTAAATGTTACCGTTTAGTGGGTAAGGCCAGAGACAAAGGAGTATAAAATTCAACCAGCAAAGGTTTAGgtgttgcattcaaaatatgaattttacagtgcaaaaccaaaatgtttcatgctactttttttttctacttttaggGAAATACACTCATGAaccatttgaattaaaatgcgTGTCTTCATTTTACTAGCTGGTCTGTTCCTGTGATGCAACAGGGCAAGTTTTAGGAACAAATATACttgaataaatgaaattgaTGTACAGAGATTTAGTCGCACAGCTGAGCACAAAATTGACAGCTGGGAGGGGCTTCTCTGTGAAGCGGCTTCCTGTTTTGGCGCTCGCCAGCCAGTCTGGTAGTGGCCTGTATATTTGTACACATGCAGCACATATATCCGAACGGTACAAAGatttttttcgttttctttttatgaaaTAGAGCTTTCTGGCGTTTAGTTGTCCATTGCACCACACTAGTTTTTGCTTGCTAAAATGGATGCATGTCCCTGACTATGCCCTTGGTGTtcaatttcagtatttttctaaCAATCATGCGCATTCCCTTAGCCTTCAGTGGACTTACTCGCTGACGTTGCTGTCGCACTCTTTTTCGCCATGTAACAACAATGTCCCTAAGCCTCAAGTTTTCTGACAATGGACCAACCCTGCTAACATGCAAATCTGTTGAATTCCCACTAGGACTACTGTGGCTGTTTATAGCTGCATTTAACACGTGGCCATATCATCTTAAATACATTCCACTGTTTTATTCCACTGCAATATATgctgtttttaagaaatatataatatattgtaaagaCTTTGGTCAAATTACTTGCGTGATTGTTTTCTCTACCCCATATAATTTCAATCTTGTctgaatgaaatgaatacaCCATTAGTTTTTATTAGAATGGTCCGTACACTGTGGTCTGACTTGCTCAGGAACTGAACTTGGATGTTGGCATAAATGACTCAAATGAAAACACTATTGCAATTAGAAA

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05853 ATP2A; P-type Ca2+ transporter type 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212097 lncRNA upstream 21446 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 21468 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 21468 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 177344 3336261 ~ 3336689 (+) True LOC122326852
TU212075 lncRNA upstream 198560 3315177 ~ 3315473 (+) True G143578
TU212176 lncRNA downstream 66181 3608919 ~ 3610050 (+) True G143638
TU212203 lncRNA downstream 208861 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 220594 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 260720 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 376995 3919733 ~ 3921719 (+) True LOC122326258
XM_043221151.1 mRNA upstream 8446 3503222 ~ 3505587 (+) True arpc3
XM_043221148.1 mRNA upstream 11291 3499645 ~ 3502742 (+) True gpn3
XM_043221150.1 mRNA upstream 16805 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA upstream 16805 3493993 ~ 3497228 (+) True LOC122326336
XM_043220834.1 mRNA upstream 33539 3475983 ~ 3480494 (+) True LOC122326141
XM_043221608.1 mRNA downstream 1505 3544243 ~ 3602480 (+) True bcr
XM_043221609.1 mRNA downstream 1505 3544243 ~ 3602480 (+) False bcr
XM_043221479.1 mRNA downstream 74301 3617039 ~ 3634175 (+) True tsc1b
XM_043220941.1 mRNA downstream 194643 3737381 ~ 3748407 (+) True stom
XM_043220942.1 mRNA downstream 194643 3737381 ~ 3748407 (+) False stom
TU212079 other upstream 194154 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 196138 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 567110 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1276838 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2284988 1228013 ~ 1229045 (+) False LOC122326311
unassigned_transcript_2519 other downstream 72422 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 158691 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 158691 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 158691 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 564063 4106801 ~ 4113733 (+) False G143725

Expression Profile