RNA id: XM_043221140.1


Basic Information

Item Value
RNA id XM_043221140.1
length 4488
RNA type mRNA
GC content 0.42
exon number 13
gene id brd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3937378 ~ 3945807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCACAACACTCCGTGTACCTCATCTCTGTGCTGCTGCCCAGCCTCCAAACAAGCGACGAGCCACTGGGATCACCACACGCTATCCCTTCTTCTAAAGCCCCTGATTTGGGTGTGAGCGAATTCTATGGACTTGGAAAGGTGTTGAGACGGTCAGTGTGGATGCTAACTCGGTTAGCCAGCTACAGCTGCGCGCCATCTTTACGTCAAAGGTTGGGTCCTGCAATGGGATGTGGTCCCTCTCAGATGACTGACGAGCttaaagaaagagaaactgaAAAGCATAAAGAGAAAGCACATTGAGAATCAAAAATAAGTCTGCCCGtggataataataaatatcccTTCCCCATTAAGCTGTTTTCCCCCTTTTCTCAAAAATGTCGACTGTCACTTCAGCAACCCCAGAAGCTCCTGCGATCAGCAATCCTCCTCCCCCTGAGGTGAACAACTCTACGAAACCTGGCCGCAAGACTAACCAGCTCCAGTACATGCAAAATGTAGTTGTCAAGACACTGTGGAGGCATCAGTTTGCGTGGCCTTTCTACCAGCCTGTTGATGCCATTAAACTTGGTCTTCCGGACTATCACACGATCATAAAGAATCCAATGGACATGGGCACCATCAAGAAAAGACTGGAGAATGTGTATTACTGGAGTGCAAGCGAGTGTATGCAGGATTTCAACACAATGTTCACAAACTGTTATATTTACAACAAGCCAACAGATGACATTGTGTTGATGGCACAAGCGTTAGAGAAGATCTTTCTTCAGAAGGTGGCCCTGATGCCTCAGGAGGAGGTTGAGCTTCTTCCTCCTGCCCCAAAGGGGAAAGGCCGCAAACCAGCAGGGCctgGTCAGCAGGATGGTGCAGTCTCTTCTGGCTCGCCCACTTCTGTTTTCCCTGCTGCCGCCTCACCAAGTTCACAGACAGCGGCGGTATCTCCAGCTCCAGTGCCCACCATCACTCCTAGCGTACCAGCTGTACAGAACACAACCACTGCCGCCGTAATACCCGGCATGCCTCCGTCGCAACCAACGATTAAAaagAAGGGGGTAAAAAGGAAAGCAGACACAACCACCCCTACTACCTCTGCCATCACCGCCAGCAGGAGCCAGTCGCCCACCCCTCTGTCAGAAGGCAAACAGGGCAAGGTGGCATCCAGGCGAGAGAGCACTGGTCGCCCTATAAAACCCCCTAAAAAGGATTTTGAGGATGGAGAACTAGGTGTACACGGAAGCAAAAAGGGCAGGCTTTCAGAGCAGCTCAAATACTGCGAGATCATCCTTAAAGAAATGCTTTCGAAAAAACACGCTGCTTACGCCTGGCCTTTTTACAAACCTGTCGACGCTGAGGCTCTTGAGCTACACGACTACCATGACATAATCAAACACCCCATGGACTTGAGCACAGTAAAAaaaaaaatggaCAGTCGAGAGTATCAAGATGCACAGAGTTTTGCTGCAGATGTCAGATTAATGTTCTCAAATTGTTACAAGTACAACCCACCTGATCATGAGGTGGTTGCTATGGCCAGAAAGCTGCAGGATGTGTTTGAAATGCGTTTTGCGAAAATGCCAGATGAGCCGGTGGAGGTGCCCGGGGCAGGCGGCGTAGGCGGGGCCGGTGTGGTCAGTAAGAGTACTGTCAGCAGTGAGAGCAGTGGCGACTCCTCCACCTCTGACAGCTCCGACTCCGAGGAGGAGAGGGCCACCCGGCTCGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAGTGTATCTCTTTGGAGCACCCCAATGGTAGCAGACAGGGGATAAAAAACGGGTGCACCAAGAATAATCAGCTGAAAGCCGTCCACGAACAGTTAGCTGCTCTTTCTCAGGCCCCTGTAAgtaaaccaaagaaaaaaaaggagaagaaagaaaaagacaagaaaaagaaagagaacaagCACAACAAACCCAAGCCAGAAGAGAAAGGCAAGCCAGGACAGCCACCGAAACCAGCACCGCAGAAAAAGGGTCCTGCCAGAAAGGCAAACAGCACTGTTCCAGGCAAcagGCAACCAAAGAAGGGCGGCAGAGGGCCAGGCTACGAGTCTGACGAGGAGATGTCACTCCCAATGACGTACGATGAGAAACGGCAACTGAGCCTCGACATCAACCGGCTGCCTGGAGAGAAGTTGGGCAGGGTGGTCCACATCATTCAGTCCAGAGAGCCTTCGCTGCGGGATTCCAACCCTGACGAAATCGAAATAGATTTTGAGACGCTCAAACCTTCCACTTTGCGTGAGCTGGAGCGATATGTCAAGTCCTGTTTacaaaagaaacagagaaaacCTCCACAGAAAGGAGGCTCAGGCCCCTCTCGGCTCAGCGGAAGCAGCAGTTCCTCAGACTCGGGCAGCAGCAGCTCCAGTGGTTCCACTTCAGATAGCAGTGACTCCGACTgaacactttttatttactttttttaattttttaaaaacattgtatgCAGTCAAGGTTGTTTCCCCTCTGAGACTTTTtataagaaagagaaagaaaagagacaataaaaatgcatcatgtcagaacttttttttttttttttttttttttttttttttttttggaaatgtcaTGAAGAAAATTTAGAGCTAAAAAGCAAACtaataaattgctttttatttccactgactctgaaagggatgtccaaacttaaaaaaaaatgcaaggaGAGGAAGTCTTGAAGCATACTTTACAGTTCAAATTCTCTTCCCCCGGCATCCTGGTAATGTTGTATGTTACCATTGCAAACACAAGCCATCCCATCTCAACAGAGAGAGCGGAAAATTGGAAAGCTCACACTCTTCTCTCCAGATTTGATTTATGTACcagtttgttgtatttattgttttttttttttttttcttgctgtggCCTCATATTTTCCCCGTTGGACACTGTgccatttattgatttatttcttctttgTATTATTGTTCTCGTAAATTGAGAAGTGTCTATGAAAATCATGCCTTTCCCAATAATGTCACAACACTTAGGTAGTCTGGGGAACAGATGGCTTTAATTAGGCATAACAAGCTCTATTTTTAAGTTGCCCGTTATTATAACTGTAgaacaatattaaaacagaatccTATACTCTTCAACTAATACATGTATGGTTtaggaaaatattttgatgGGAATCAAGTAGATTTGGTGGTTTTGTACAGATGCTTTACAATGACGTGAACATGTAAATCAGTCAGCTGGATCACATGCAGATTTCCTGTCTTATTAAATGCCTTGGTCAgcaataaatatacagatttcCAAATAGTCACACCAATGACTGACATTTGTACATCACATCATTTTAGATAAGGCCAGGATGCTGACACATGAAAGcagtaaatgtcatttttatcttGATCTATACTGccatattataataatgctaATTATGCATTTCTTGATGGTAATTTCAATTGTTTTGACAATGGTAGTTAAATCACAGTCTTCCTCTTCTCACTCTCTTGCAAAATTGATTGATGAATGTAAGTCTACAACAGATCTCATGAATAGTACGCAGTCCCAATCAGATGGGGTTCAAACAAGTTGCTTTTCTTTACGGGGTTTCCCAGCCATTCCTTCTGTGGATTGCTTTACTGTCCCATATCTCTTAGAATAACTATGCGTttgattgattgttttcttAAGTGTTTGTAAGATATTGTAATGTCCTCtctaatgattttattttatttttttattttaagagaaaAGCTTGTAAGTGTTGTAAAGGGAACTGATATCTGTTGAATTTTCTGATGCATTTTGGTTTATGGACAGGTCTTTTGAAGACTTAATTGCAGGAACactttttgtaatcattttgaTAAAGCTAAAATTCTTGAGGGACATGTATCTTTCAGAATAATTAAAACACTAATAGGCATAGTCAGAACGTAATTATTTTAAGGTTAATCATGTTATTAATGATTTTGTTGTCTGTTGTTTGGGTGCGCACGACTACAAAGCTTCCCTAAGTCATTTTTGAGTGTCTGATACAAATATTGATCAAGTCCTATCTGATTTCTGCAAATGATTTCTTTTAGAGATGgactgaaaagaagaaaaagtataTGACTATATagataaagtatatatatagatatacaacGTAATTTCATTTTAGGCCCTGATTTGAAAAGAAAGttccttttatatttaaagcaaaaagtttactttttattttgacatgcatgctgatttattgtatttttcttaaaaaagaaaaaaaaaaaaagattttgagcTGTTTATAGTTATACTGTAAATGTCAGTCATGGAAACAACAAAATCAAGAATACAGTGTGAGTAGATTTAGGCTTGTTTATTGCGATACGGGCCGGTGGGTTGGGGCAGTGGTAGAGGCTAACATTTGATGTAATTGCCTACCTGGAATGTCTTGTACACCgggtaattttttttcataaaataaatgacaaattgcctttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247456.1 lncRNA upstream 15659 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 16099 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 133609 3803458 ~ 3803769 (+) True G143664
XR_006247515.1 lncRNA upstream 167822 3763332 ~ 3769556 (+) True LOC122326834
TU212203 lncRNA upstream 185180 3751599 ~ 3752198 (+) True G143656
TU212299 lncRNA downstream 129720 4075527 ~ 4086526 (+) True G143717
TU212327 lncRNA downstream 160994 4106801 ~ 4108678 (+) True G143725
TU212347 lncRNA downstream 566119 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212360 lncRNA downstream 605614 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 617527 4563334 ~ 4578128 (+) True LOC122326582
XM_043221653.1 mRNA upstream 18671 3786759 ~ 3918707 (+) False rxraa
XM_043221655.1 mRNA upstream 18671 3786761 ~ 3918707 (+) False rxraa
XM_043221650.1 mRNA upstream 18671 3786762 ~ 3918707 (+) False rxraa
XM_043221652.1 mRNA upstream 18671 3786765 ~ 3918707 (+) False rxraa
XM_043221654.1 mRNA upstream 18671 3827237 ~ 3918707 (+) False rxraa
XM_043221682.1 mRNA downstream 1259 3947066 ~ 4074419 (+) True vav2
XM_043221683.1 mRNA downstream 1259 3947066 ~ 4074419 (+) False vav2
XM_043221685.1 mRNA downstream 1259 3947066 ~ 4074419 (+) False vav2
XM_043221684.1 mRNA downstream 1259 3947066 ~ 4074419 (+) False vav2
XM_043221688.1 mRNA downstream 1260 3947067 ~ 4074419 (+) False vav2
TU212191 other upstream 232981 3701429 ~ 3704397 (+) False G143650
TU212192 other upstream 232981 3701429 ~ 3704397 (+) False G143650
TU212193 other upstream 232981 3701429 ~ 3704397 (+) True G143650
unassigned_transcript_2519 other upstream 322147 3615160 ~ 3615231 (+) True trnam-cau_115
TU212079 other upstream 617499 3318235 ~ 3319879 (+) False LOC122326950
TU212323 other downstream 160994 4106801 ~ 4113733 (+) False G143725
TU212330 other downstream 186629 4132436 ~ 4386212 (+) True G143726
TU212324 other downstream 263453 4209260 ~ 4213772 (+) False G143725
XR_006247544.1 other downstream 635244 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 636111 4581918 ~ 4581990 (+) True LOC122327008

Expression Profile