RNA id: XM_043221151.1


Basic Information

Item Value
RNA id XM_043221151.1
length 882
RNA type mRNA
GC content 0.46
exon number 7
gene id arpc3
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3503222 ~ 3505587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCTCCCAGTGGTTGTGTCCGGAAGTTGTCCTGGAAACTTCCTGTATCGGTGTTGGGTGGGACAGCGGAAGCGGCGGCTCGCAGCGCTGACATATTCATTTTTGCCTGCCAGATTTGGGACGTATTGTACCAAGATGCCGGCTTACCACTCGAGCCTGATGGATGCGGACACCAAAATGGTGGGAAACATGGCATTGCTGCCCCTCAAAACACAGTTTAAGGGTCCTGCTGCgaaagaaaCCAAAGACACCGATATTATTGATGAGGCCATCTACTACTTCAAAGCCAATGTTTTCTTCAAGAACTATGAAATTAAGAACGAGGCTGATCGAACTTTGATCTACACCACACTTTACATCTCCGAATGCCTCAAGAAGCTCCAGAAGtgCAGTTCGAGGGGTCAAGGAGAGAAGGAGATGTACACGCTGGGAATTACCAACTTTCCCATCCCAGGAGAACCTGGCTTTCCTCTGAATGCCATGTACGCTAAACCCTCGAACAAACAGGAGGAAGAAACGATGAGGGCTTACCTGCAACAAATCAGACAGGAGACAGGACTGAGATTGTGTGACCGTGTGTTCGACCCTCAGACAGACAAACCAAGCAAGTGGTGGGTGTGTTTTGTGAAGAAACAGTTCATGAACAAAAGTCTGTCTGCACCTGGCCAGTAAGAAACCACTCAGGATCTCTGGTTCTGCGTGGGACGTGGATggggttttttcttttattttctgtctttttttttctttaatgtgtatgtgagtgtgtttacTCTAAGATTTTTTTACTGGTGATATCAAGTATATTTGACTTCTGGCCTGTCATTCGAAGCAGAAgccaatcaaataaaaatctattaaagaGAAACAAGACAACGGCA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05756 ARPC3; actin related protein 2/3 complex, subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212097 lncRNA upstream 10635 3488511 ~ 3492587 (+) True G143590
TU212095 lncRNA upstream 10657 3488511 ~ 3492565 (+) False G143590
TU212099 lncRNA upstream 10657 3488511 ~ 3492565 (+) False G143590
XR_006247518.1 lncRNA upstream 166533 3336261 ~ 3336689 (+) True LOC122326852
TU212075 lncRNA upstream 187749 3315177 ~ 3315473 (+) True G143578
TU212176 lncRNA downstream 103332 3608919 ~ 3610050 (+) True G143638
TU212203 lncRNA downstream 246012 3751599 ~ 3752198 (+) True G143656
XR_006247515.1 lncRNA downstream 257745 3763332 ~ 3769556 (+) True LOC122326834
TU212214 lncRNA downstream 297871 3803458 ~ 3803769 (+) True G143664
XR_006247456.1 lncRNA downstream 414146 3919733 ~ 3921719 (+) True LOC122326258
XM_043221148.1 mRNA upstream 480 3499645 ~ 3502742 (+) True gpn3
XM_043221150.1 mRNA upstream 5994 3493984 ~ 3497228 (+) False LOC122326336
XM_043221149.1 mRNA upstream 5994 3493993 ~ 3497228 (+) True LOC122326336
XM_043220834.1 mRNA upstream 22728 3475983 ~ 3480494 (+) True LOC122326141
XM_043222180.1 mRNA upstream 164257 3336985 ~ 3338965 (+) True LOC122326952
XM_043221006.1 mRNA downstream 8446 3514033 ~ 3542738 (+) True atp2a2b
XM_043221608.1 mRNA downstream 38656 3544243 ~ 3602480 (+) True bcr
XM_043221609.1 mRNA downstream 38656 3544243 ~ 3602480 (+) False bcr
XM_043221479.1 mRNA downstream 111452 3617039 ~ 3634175 (+) True tsc1b
XM_043220941.1 mRNA downstream 231794 3737381 ~ 3748407 (+) True stom
TU212079 other upstream 183343 3318235 ~ 3319879 (+) False LOC122326950
TU212076 other upstream 185327 3315756 ~ 3317895 (+) False LOC122326950
unassigned_transcript_2518 other upstream 556299 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 1266027 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 2274177 1228013 ~ 1229045 (+) False LOC122326311
unassigned_transcript_2519 other downstream 109573 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 195842 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 195842 3701429 ~ 3704397 (+) False G143650
TU212193 other downstream 195842 3701429 ~ 3704397 (+) True G143650
TU212323 other downstream 601214 4106801 ~ 4113733 (+) False G143725

Expression Profile