RNA id: XM_043221156.1


Basic Information

Item Value
RNA id XM_043221156.1
length 7163
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC122326342
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2957186 ~ 2964676 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACAAAGATAATGACATGGCGTGACCTTCCTGTCTAACGTCCTTAGCAGCAAACAAGATGTTGCTGGAGCCTATGGCGTGATGAGGTTTTGGTGGTTGCCTATGTCTCTCCTTACTGTAGTTATGCATTTTCAACTGCAGAAAGCATTTATAACTTCAGATAGTATTCCATGTCAGGAAATACTTTGCCAGGACTGGACTTTACTTCAAACTGTTCTCAGAAAACAAGGTTACATGTGCAGATGCTTTATAGTAAAGTGTGTCTACATTGCAGAAGTGCGCAAGATCAATCATATGCCGTGCATATGGCTTTACAGaggacatcataaaaagaaaatacagactGCAGTATTACCACCCAAGCTTATTAGGAGCTTACTAAGAGGGAAGATGCGTTCATTAAAACAAGGCATCACTTCAAAAACATGTCTTATAATTGGTGCATTCCATGTTAAAAGAAAGTCACTCACGAAACTGGACAAGCAACCCAAAGATACACCTTCTTGCTGCACTATTGACCATCATTCTAGTCAAACCACAGATGGATTTCTAGGGGATGCTTTTGAAGACACCCCTGAAAGACGTTTAAGGAAACAGGTGTCAGATCTAGCTAAGATGCTAAGTAATGCTTTCCCATCTGCTACATGGTTGAGAATGTTTATTAATCAAAAGGGTTCAACCATCTGTCCCATAAACCAGGCTACAAGATATTCACCACCGAACCAAGGAgtagaaatcaaaataaatgacttagTAGAAAGCACTATGAAATTTGAGTCATATTCTAATAATGATGCTGTCGTCTACATGGAAAAAATACTGGTGTTATTAGGAATGAGAGTTTTCCAAACGACAGCAAAGGACAGCATAGTTACAGCAGAGACTAAGACATTAGATAAGGTACAAACAAATGACTCAATACACAGACACCAGGTTCCACGGAAAACGTTAAGGCAAAAAAGAAGCATACGGAAGCCAAGGTCAACAACTGTCTTAGCACAGGACGAATCGAAAGATGATGACAAGATGACCTCAACCATGTCATTCAGTCAAACAGTTTTAAAACCACATAATGCAGAAGGTAATACTAAAGATACAAGCATAACAGTGAGCTTCAAGACAGAACATACTGAAAAAAGTGAGTTTGAAAATCCGGCCACATCtagaaaatatgcaaatactGTCACACTTACAAAACAACAGATGGGAATTACAACAGTGCTGACTGAAACAGACTGTACAACAGAACTGGAGAGACCGTCAGCAGAAAACGAAGGAAGTGAGAAGAAAATATCTTCAGGGGGCAAAGAAATCAGGACAAAAGTAGAAGCAGTTCAGAATACCGCAAAATTTGGTCAAAAACACCAGGCAAGCTTTGGTGGAAACAGATTAACGGTGGCAAAAGCAAcactggaaaaagaaaacagcgtATCTGATATAAATGACAAGCTTGAGAAAGAAAACTCTGAGCAAAGAGAGGACTGGATAGAAATGGAGAAGCCAATCATGGTAACAAGTCAACCTGACAATTTAATGACAAAAGCATCCCAAACAAATAAACCAGTGACAGCAACCACATCCAGAGGGAATAAACATACTGGCATGCTGACAGAAAAAGAGACTGGAATCACAACAGCGCTTCCTGAAACTGAATGTACAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGTGGAGAGAACAGATCCCACATATGGTGAAAAATATGATGGTTTAAGTTTAGaacgtttaaaaacaaaaagtatgaaTGAATTACTTACATCAGCTCCCTCTGGAGCACATGAAAATACTGGCATAGAGACTGAACATGAGGAAACGACAACAGAGCTTCATGAAACAGAATGTATAACAGAAATTGAGGCACTAGTATCAGAAGATAAAAAACCTGTGGAGAGAACCGATACCACATTCAAAGAAAGTCAGTCAGAGCCTgttgatttaaataaacaacatcttgaaacagaagaaacaaatgaacaagtgacaccaaacatattaaaaaaaaatgcagattcacTGGAGACTGAACAAGACAGAAGAATGACAGTGGATATTTCTGAAACTGAATGTACAGAAATCAGCTTGTCAACTGCAGAACAAAGAACATCATTGGGGATACCATCTAAGACAACTGAAGAAAGATTGACAGTCACAAATGAATCAGCTAAACTAAACACTTCCACAAAATACACAGAATATTATATTTCAACCATACAAGAGATATTAATGACAACAGAGACTCTTGAAACTGAATGTACAACGGAAATTGAGCTACAAACACCAGAAGATAAAACACCAGCTACCAGATATGAAGAAAGACTTTTAGAACCTGTTCATTTAATTACTGGAAATTCTGATACAAAAGGTACAGATGAACCAGTGACACCAATGACATCCACAAAATCAACAGAAGATTTCATATTGACCAGACAAGAGACATTAATGACAAGAGAGACTCTGGAAACTGAGTGTACAACAGAAATTGATTTGCAAACACCAGAAGATAAAACACCTGTGATGACAACAACTATcacatatgaaaataaacatacagaaCCTGTACATTTCAGCTCAGAAAACACTGAGTCACAAGACAATACACCAATAAATTCCATAAAGTATGCAGATAATTTCATTTCAACTACACAAGAGACATTTACGACAACAAAGGCTCTGGAAACTGAATGTACAACAGAAATTGAGCTACAAACACTAGAAACACCTGTGGAGAGAACAGATATCACACATGAAAAAAGAcagtcaaaatataataatttaagttCAGAATATCtaacaaaaagtacaaatgaaCCAGCTAAACTAAGCACTTCCACAAAATATGCAGAAGATTTTGTTTCAATCAAACAAGAGACATTAATCACAACAGAGACTCTTGAAACTGAATGTACAACAGAAATCGAACTACAAACACCAGAAACACCTGTGATGACAACAACTAAAACATATGAAGAAAGTGAAGAAAGACTGTCAGAACCTGTTGgtttaattacaaacaatattGAAACAAAAGTTACAAATGAACCAGTGACACCAGTCACATCCACAAAATCTACAAAAGATTTCATGTTGACCAGACAAGAAACATTAATTACAACAGAGCTTCCTGAAACTGAATGTACAACAGAAATCAAGCTACAAACACCAGAAGATAAAGCAACTACCAGATATGATGAAAGATTGTCAGAACCTGATGATTTCATTTCCAGAAATCCTGAGTCAAAAAGTACAAATGCACCAATTACAACAACCACTTCCATAAAATATGcagataatttaatttcaaccaGACAAGAGACATTAATGACAATAGAGCTTCCTGAAACTGAATGTACAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGTGATGACAACAGCAACCAGAtatgaagaaagagagacagaacctgttgatttcatttcagaaaataCTGAGTCAAAAGGTACAAATGCTCTGTCGATACCAACAAATTCTATTCTGGCTGATAATTTAATTTCCACCAGACAAGAGACATTAATGACAACAGATGCTCTGGAAACTGAATGTACAACAGAAATCCAGATACAAACACCAGAAGATAAAACAACTACCAGATATGAAGAAAGATTGTCAGAACCTGAGAATTTCATTTCAAGAAATACTGAGTCAAAAAGTACAAATGCACCAATAACAACAACCACTTCCATAAAATATGcagataatttaatttcaaccaGACAAGAGACATTAATGACAACAGATGCTCTGGAAACTGAATGTACAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGTGGAGAGAACAGATATCACACATGAAGAAAGACAGTCAGAATACAATAATTTAAGTTCagaatatttaacaaaaagtacaaatgaaTCAGCTAAACTAAGCACTTCCacaaaatatgcagatttaatttCAACCACACAAGAGACATTAATCACAACAGAGACTCTTGAAACTGAATGTACAACAGAAATCGAACTACAAACACCAGAAACACCTGTGATGACAACAACTAAAACATATGAAGAAAGTGAAGAAAGACTGTCAGAACCTATTgatttaattacaaacaatattaaaGTTACAAATGAACCAGTGACACCAGTCACATCCACAAAATCTACAAAAGATTTCATGTTGACCAGACAAGAAACATTAATTACAACAGAGCTTCCTGAAACTGAATGTACAACAGAAATCAAGCTACAAACACCAGAAGATAAAGCAACTACCAGATATGATGAAAGATTGTCAGAACCTGATGATTTCATTTCCAGAAATCCTGAGTCAAAAGgtacaaatgcacaaataacaacaaccatgtccataaaatatgaaaaagatttCACTTCAACCAGACTAGAGACATTAATCTCAACAGAGACTTCTGAAACTGGATTAACAAAAGAAACTGAGCTACAAACACCAGAAGATAAAACACCTGTGATGACAACAGCCACCAGATATGAAGAAAGATTGTCAGAACCTGAGAATTTCATTTCAAGAAATACTGAGTCAAAAGGTACAAATGCACCAATTACAACAACCACTTCCATAAAATATGcagataatttaatttcaaccaGACAAGAGACATTAATGACAATAGAGCTTCCTGAAACTGAATGTACAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGTGATGACAACAGCCACCAGATacgaagaaagagagacagaacctgttgatttcatttcagaaaataCTGAGTCGAAAGTTACAAATGCTCTATCGATACCAACAAATTCCATTCTGGttgataatttaatttcaaccaGACAAGAGACATTAATCACAGCAGAGGCTCTGGAAACTGAATGTACAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGGGATTACAACAGCTCTCACAtatgaagaaagagagacagaacctgttgattttatttcagaaaatactGAATCAAAAGTCACAAATGCACCAGTGACACCAGCCACTTCCATAAAATATGCAGACAATTTAATTTCAACCAAACAAGAGACATTAATGAAAACAGAGACTCTGGAGACTGAGTGTACAACAGAAATTGAGTTGCAAACAACAGAAACACCTGAAACACCTAAAGCATATGAAGAAAGACTGTCAGAACTTATTGATTTAGTTACAAACAATATTGAGACAAAAGTTACAAATGAACCAGTGACACCAATCACATCCACAAAATCAAAAGAAGATTTAATGTTGACCAGACAAGAGATATTAATGACAACAGAGCTTCCTCAAACTGAATGTACAACAGAAATCACATTACAAAcacctgaaaataaaacacctgTGGAGAATACAGATGCCACAGAAAGACACTCAGAACATGATGTCACACCAACAGAACATGAAATAACATTAGTGCTTCCTGATACAGGATGTACGATAGACTCAACAGAAAAACCTGCAGATTATTTGGTGAAAcaagaaaggaaagaaatgaaGCCAACAATGGCAATGCCAAGGGTGGAAACTCAATCACCACCAAGTATAGAAACAGAAGTGCCATGGCACGGAGATGAAGATGGTTGCACTGGACTAATTCATCGGACCAACTCTGGGTTGAAAAGATGCCAGGAAAAGatcatgaaaatatttgatttaaagtcAGAACACCTTGCAACTGAAGGTACGAATGAATTAGTTACAGCaacaaaatatacagaaaatttAATTAggattgaaaatgaaaaaagaatgaCAACACAGAGTCTTGAAACAGAATGTATAACAGAAATTGAGCTACAAACACCAGAAGATAAAACACCTGTGATGAGAACAGATATCACACATGAAGAAAGACAGTCAGAATATAATAATCTGGGTTCAGAATATCtaacaaaaagtacaaatgaaCCCGCTAAACTAAGAACTTCCACAAAATATGCAGAAGATTTCATTTCAACCAAACAAGAGACATTAATGACAACAGAGACTCTTGAAACTGAATGTACAACAGAAATTGAGCTACCAACACCAGGAGATAAAACACTTGTGGAGAGAACAGATATCACACATGAAGAAAGACAGTTGAAATATGATGATTTAATTTCAGAACATCTCCCAACAAAAGATACTAATAAATTAGTTACATCCACCCCTTTAAGAAGAGATGAACACACTGTCATAGAGACTAAACATCAAATGGAATCGATAACAGAAGTTCCTGAAAAAGAATGCACAAAAGAAATTGAGATACTGATACCAGAAGATAAAAAGCCACCAAGCAAAGAAGCAGAAGGATCAATGCCTACAGATGAAGATGGTTGCTTTGGACTAATTCACCGTACCAGCTATGGGATGAAAAGATGTCAGGAGAAGatgattaaaattttattatacaatacCACACCAAAACCACAAGAGCCTTCAACTGTGAAACATAGGCAAGAGACTACAGAACAATTTTTCATATCGCAGAATGCTCTGCAATCATCAcctctgaataataataataataagatggACAAAGTTAATGATGAAGATGAAAATAGCCACTTCTACTATTTCAATGGCAAGTTAAAAAGAGTTGAAAATCATGCATTGATACAAGAGCATGATAACAACACGTACACTGAACAGACCATTGGacttttaaagaatatttaaagtATTCTGTAAATGAAACTGTAATTACTTACATTAATTATGTAATTGTAGTTATCTAAAGGGAAATGACCGATCGACGACTCACAGCTGGTCGCGCTACGTTACATTTACAAAGACATTTAATCAACCTATTCAgttgaaaaaaagacatttctaaagTAAGTTTATGGCAGGTTTTGATCTACGTTTCTTGTACTGAAgctattacaaaaatgtaaaaaatggtaAATTATCTAATTTCGTTGATGTCGTTGATctaagacacacagacagacagacagacagacagacagacagacagacagatagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatgaaaggaAAAGCGTTACCAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211980 lncRNA upstream 19569 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 94169 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 126830 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 155838 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 413879 2487403 ~ 2543307 (+) True G143385
TU212075 lncRNA downstream 350501 3315177 ~ 3315473 (+) True G143578
XR_006247518.1 lncRNA downstream 371585 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 523835 3488511 ~ 3492565 (+) False G143590
TU212097 lncRNA downstream 523835 3488511 ~ 3492587 (+) True G143590
TU212099 lncRNA downstream 523835 3488511 ~ 3492565 (+) False G143590
XM_043221159.1 mRNA upstream 606 2954779 ~ 2956580 (+) True LOC122326345
XM_043222161.1 mRNA upstream 95836 2845780 ~ 2861350 (+) True fam169ab
XM_043222160.1 mRNA upstream 95836 2846213 ~ 2861350 (+) False fam169ab
XM_043220871.1 mRNA upstream 111970 2842705 ~ 2845216 (+) True LOC122326157
XM_043221157.1 mRNA downstream 1490 2966166 ~ 2976051 (+) True LOC122326343
XM_043221981.1 mRNA downstream 327021 3291697 ~ 3294008 (+) True LOC122326816
XM_043222177.1 mRNA downstream 333314 3297990 ~ 3320013 (+) True LOC122326950
XM_043221929.1 mRNA downstream 361824 3326500 ~ 3329805 (+) True LOC122326784
XM_043222180.1 mRNA downstream 372309 3336985 ~ 3338965 (+) True LOC122326952
unassigned_transcript_2518 other upstream 10263 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 719991 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1728141 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1801044 1153109 ~ 1156142 (+) False glrx
TU212076 other downstream 351080 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 353559 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 650484 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 736753 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 736753 3701429 ~ 3704397 (+) False G143650

Expression Profile