RNA id: XM_043221159.1


Basic Information

Item Value
RNA id XM_043221159.1
length 1318
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122326345
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2954779 ~ 2956580 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATTCAGCTATGGCAGAACACAGCGAGCCATGAGTGCATAAAGAAATCAAACAAAGATAAGAACTTGTCGCATAAGCTCGACTGCCTCCACACACCTGTCGAGAAAGAGCCATGGTGAAGTTACAATGGCATCTGAGCTTTGCCTCAATGTGCTTGTATGTGTGGGGTGGATTATTTACACCTGATCACCACACTGAAAAGCAGAACAATTGCGAAGGACACTTTTACAAAGGATGGACCCACCTTCGACTGCTTCTTAAAAAAGCTCCTTTGGACTTCTGTTGTAGATGCAACGGagagaaatgcatttctatCGCTATTTTTCCTACTTCAAAACATGTGCCAGTTTTTTGGGCATATAAAATAAGGCATGCTGAAGTCCCTGATTTGTCAGAGCATGATCTCTTGAAGAACATTGCAAAGTGGTATATACCACCATCGGTTACTGAGAATATGCTCAGAGGAAAGTTGCATTCACTTCCCCCTCAAGTGACCTCAACACCCTCCCCATCAGTAACACATATTTTAAGTGGTGTGTTTAGTCTCGATGCAAAATACATTCACAAAGAGGGAAACTGGCACAACACAGGCTATATTCGCTGGATCACGTATCATCACACAAATGCAAATGGGTTTAGTTTTGAAGGAGCTCTTCTCCAAAACAGTCAGGAGAAATGTAAGTGGAAATGGCTGACGGTGGAGCAACTTGTTGGGATTCTTTCTAAAGTCTTTTTGGCCAACCCCATACAAACCTCCTTCAGTCATCAAACCGCAGGACCTTTAAACCTGAATGGCTTAGATGAAATTCCAGACAACTTTTCCGTAGGGGCAAAGATAAAGGACTACCTAGACAGCGCAATGCCATGTGTGACGACAGCTCCAATGCGAGTCAAAGAAGCAGAACATGACTTTTCCAAAGTCACAACAAGCAGCAAACCCTCACTGAGTTCAGATAGGACTGCAGGCCTGTGCTCTGGGCTCATTCACCGTACTGTCGCCGGTTTGAAGAGATGCCTTGAGAGGAtgattttagaaaaagaaaattacaccACCTCTTCATCGCTCTCGCATTTCTCTTTTGGCAACAAACCACGCAATGCCAGATCAGAAGTCAAAAAACAGAGCCCCttagaattaaatgaaatcattaaTCACAGTAAATATACCACACAAAAGCCACGCAACAGTGATCTCAGTGTCAaggaaaatgatcatttttactACTTTAATGGCAAATTGAAACGTACAACAGATGGCAATGGATAAGATACATCACATATTAGAGccaaaacattttatagtgAAAGtcagttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211980 lncRNA upstream 17162 2930262 ~ 2937617 (+) True G143509
TU211960 lncRNA upstream 91762 2862772 ~ 2863017 (+) True G143491
TU211940 lncRNA upstream 124423 2829114 ~ 2830356 (+) False gnrh2
TU211921 lncRNA upstream 153431 2800730 ~ 2801348 (+) True G143465
TU211774 lncRNA upstream 411472 2487403 ~ 2543307 (+) True G143385
TU212075 lncRNA downstream 358597 3315177 ~ 3315473 (+) True G143578
XR_006247518.1 lncRNA downstream 379681 3336261 ~ 3336689 (+) True LOC122326852
TU212095 lncRNA downstream 531931 3488511 ~ 3492565 (+) False G143590
TU212097 lncRNA downstream 531931 3488511 ~ 3492587 (+) True G143590
TU212099 lncRNA downstream 531931 3488511 ~ 3492565 (+) False G143590
XM_043222161.1 mRNA upstream 93429 2845780 ~ 2861350 (+) True fam169ab
XM_043222160.1 mRNA upstream 93429 2846213 ~ 2861350 (+) False fam169ab
XM_043220871.1 mRNA upstream 109563 2842705 ~ 2845216 (+) True LOC122326157
XM_043220872.1 mRNA upstream 109563 2842705 ~ 2845216 (+) False LOC122326157
XM_043220873.1 mRNA upstream 109563 2842706 ~ 2845216 (+) False LOC122326157
XM_043221156.1 mRNA downstream 606 2957186 ~ 2964676 (+) True LOC122326342
XM_043221157.1 mRNA downstream 9586 2966166 ~ 2976051 (+) True LOC122326343
XM_043221981.1 mRNA downstream 335117 3291697 ~ 3294008 (+) True LOC122326816
XM_043222177.1 mRNA downstream 341410 3297990 ~ 3320013 (+) True LOC122326950
XM_043221929.1 mRNA downstream 369920 3326500 ~ 3329805 (+) True LOC122326784
unassigned_transcript_2518 other upstream 7856 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU211695 other upstream 717584 2233659 ~ 2237195 (+) True G143321
TU211224 other upstream 1725734 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 1798637 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 1798637 1153109 ~ 1156142 (+) False glrx
TU212076 other downstream 359176 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 361655 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 658580 3615160 ~ 3615231 (+) True trnam-cau_115
TU212191 other downstream 744849 3701429 ~ 3704397 (+) False G143650
TU212192 other downstream 744849 3701429 ~ 3704397 (+) False G143650

Expression Profile