RNA id: XM_043221210.1



Basic Information


Item Value
RNA id XM_043221210.1
length 2875
RNA type mRNA
GC content 0.47
exon number 21
gene id smpd4
representative True

Chromosome Information


Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4510370 ~ 4520829 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTAAGCGGATATGACATCACAACAAACGCATTTGACTCTTCTTGGATGTTTGGTTTTCATCTGTGGTCTTGAGTTTTCATGGCTGCACCTGCCCTACAACAGCCCAGTTATCTTCTGGCCAATTTAAAGGCAGACTGGACCAATAAACCTCTTCATCAGAGATGTCACGAATTGGGCAAAATTATAGACGATTACCCTGCAAAGGAGCTGCATGCAGTCTTTTCCTGGTTGGTGGAGAGTGTATTCGGGAGCCTGGATGGAATCCTTAGTGGCTGGAATCTCCGGTTTCTGCAGGCTCGCTCAGCAGAGTACAACATCGCCATGGACTTCCTGGACCCAAgTGGTGCTATGATGAAACTGGTGTACAAACTACAAGCTGAGGAATACAAATACGAGTTTCCAGTCAGTTATCTACCTGGTCCTATAAAGTCGTCCATTCACGCTGGGGTATTGCCAGACTGCCCTTTGTTTCACAATAAAATCCAGTTCCCCATGTCAGGCCTTCTGTTACTCAATCCTTTTGAATATTATATGTTCAGCTTTGCCTCCAGTCTCATTGCACCAAAGAACTACCCTCCAGGGCAGCATGGGAGTTGCTCAGATAGCGCATATTTTGTGCTTGTCGACACCTACCTCAAGTACTTCCTCCCTACAGAGGGCAACGTGCCTCCATCACCTTTCTCAGACACCAGGGGAACCGTGGCCTCTCCTGCTCCAAGGTCTCCCAACGTGCCTTATGTTGGATATGGCGGTCACAGCACCAGTTTGTTGAAGCGTCATATTACCCATCAGCCCTCAGTCAACGCTGACCCTGCTGCTCAAGAAATCTGGAGGTCAGAGACACTGCTGCAGgTCTTTGTGGAAACTTGGCTTCATCACTATTCTCTGGAGATGTACCAGAAGCTGCAGTCTCCTCAGGTGAAGCTGGCGTTGTTGCAGTACCGCCTCAGTATGTCCAGCATGCTGTGCCAACCCCCCGCCCCACCAGGCTCTGGGACCCTCCACACATACCAAGAGCCCTTCACACCTTCGGAGGAGCATGTCCTTGTTGTGCGTCTCCTTGTAAAGCATCTGCACGCCTTCTCCAGCAGCCTAAAGCAGGAGTCGATTTCCTCCTCACCTTCTGCCCACTCCCACAGCAGTCCTCTGGAAGAGCTCAAGCGTGTGGTGGTACAGAGGTTTGTCCAGCAGAAGCTGTATGTCTTCCTACAACACTGCTTTGGTCACTGGCCTTTGGACGCCTCATTCAGAGCGgTACTAGAGACGTGGCTTAGTTACATTCAACCCTGGAGAtacactggagaaaaaaaccaCATCCAAGCAGACGGCCAGAACAGAACTGTTCCTGATAAatgGGCCTCATTTGTGCAGGAGAATCTGCTTATGTACACAAAACTTTTCCAAGGCTTCTTGAATCGAGCCATGCGCACGGATTTGGTCAATGCCAAAAATGCCCTGATGGTCTTTAGGGTCGCCAAAGTGTTTGTTCAACCAAACCTGTCAGAGATGATCCAGAAAGCTGAGCAGTTGTTCTTGGAGCCAGAGCATGCCATCCTGCAACGACAGAACCGTGTCTTCCTGACACCTTCACATGGTGGCAGCTTCCTCTCTTCTCGTCAGCCAGTGGGGACAGACTGCGTCTTCAAAGTCAAAAGTCATGTTTACAGCTTGGAAGGGCAAGACTGCCAGTACAACCTGATGTTTGGTCCTGATCTACGGAAGAATGTTCTAAAGCTCATCCAGATTATCGCTCAAGCCCGACAGACAGCTAAACGGATATCAGATCATTCCACCGAAATGGCTGCAAACAACTCTTTTCTCTCATGGTTTGGAGTCGGCTCTTCAGATCATAACACCACCTTTACTGGAGGAGAGATGGATGATATGGGAGAAGGTGTGAAGAAAACTCATGAGTTCCTGGACAAAGCCCTGGACTACCTGTGTCAGATATTCCGGTTGAATGCAGGGCAGCTGTCTCAGCTGATGGTCAGTGTGGCATCTGTAGACGATGAAGGGGCATCTAAACAACTGCCAGACTGCATCCCGAGTGAAAATGGGCTTGTGTTAACAGACCTGGGCCGGTTGCAGATCATCAATGGTCTTCGTAGATTTGAAATAGAATATCAAGGAGATCCAGAGCTTCAGCCTATCAGGAGCTACGAAAATGCTTTTTTGGTCCGACTGATGTTCCAGATCTCATCCTTTATTAACGCAAGATTTGGAGCCCGCATGGAGGCGCTGTGTTCCCGACAGGACCTCCTGGGCAGTATGGGAAGACACTACCTGAGCAGTTCCTCGAAAGTGTTGGAACAACGGCGGAAGAGTCCGGTGACGCGGCAGATGAGGGATCGTACTCAGCGAGCCCGCCTCAGCCTGCGGCTCCTGGCCAGCTATCGCAcgctcttcatcctcctcctgcTCTACGTACTGTTTGCACTACTGTCTTTCGGTGTTCTCTCCAGCACTGGACTCATTCTCGTCGTCAGCTTTCTATATGAGCTCTTGTTGAATTTCTTTCATGAAAAACTAAAGACTCAGTGAAAGACGATTCATGATgcctttttgatattttatttttattatgtcaaTACTAAACTTCTAGCGACCTGTCCTCATGAAGgcttttatatacagtatttgcaCTGCAAGTGTATTGGTACATTTAATGACAAATTGATATCTTATTGAAATATCTTATgcacagtgtgtttttttttttgttttttttttttttaaatcaacaagaAGTGGTTTATCCAGCTTTTCGGTCATTAAGTTCATTTATAATGGTGTGTTTTTGCCAGTGTGATTCTCGGCACAATCCAAAGTTTGCACTTGACTGactgcatttcattaaaagGACATATTGAATGTC

Function


GO: NA

KEGG:

id description
K12353 SMPD4; sphingomyelin phosphodiesterase 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU212327 lncRNA upstream 401692 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 423844 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 588651 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 589091 3921080 ~ 3921279 (+) False LOC122326258
TU212214 lncRNA upstream 706601 3803458 ~ 3803769 (+) True G143664
TU212360 lncRNA downstream 30592 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 42505 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 67897 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 230388 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 231078 4751907 ~ 4752259 (+) True G143827
XM_043221519.1 mRNA upstream 151067 4338972 ~ 4359303 (+) True LOC122326553
XM_043221521.1 mRNA upstream 179016 4287203 ~ 4331354 (+) True LOC122326555
XM_043221520.1 mRNA upstream 223945 4283196 ~ 4286425 (+) True LOC122326554
XM_043221737.1 mRNA upstream 281878 4207661 ~ 4228492 (+) True rimbp2a
XM_043221736.1 mRNA upstream 303689 4106787 ~ 4206681 (+) True LOC122326660
XM_043221211.1 mRNA downstream 136 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221386.1 mRNA downstream 17433 4538262 ~ 4544632 (+) True crkl
XM_043222093.1 mRNA downstream 33529 4554358 ~ 4557626 (+) True nefla
XM_043221560.1 mRNA downstream 59805 4580634 ~ 4583302 (+) True rpl17
XM_043221810.1 mRNA downstream 65061 4585890 ~ 4588458 (+) True nkx6.1
TU212330 other upstream 124158 4132436 ~ 4386212 (+) True G143726
TU212324 other upstream 296598 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 396637 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 805973 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 60222 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 61089 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 62270 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 184372 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 209774 4730603 ~ 4730881 (+) False slc45a2

Expression Profile