RNA id: XM_043221213.1


Basic Information

Item Value
RNA id XM_043221213.1
length 5136
RNA type mRNA
GC content 0.45
exon number 22
gene id grin1a
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1023624 ~ 1048011 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCACAGCTGTCAGCACCAAGGACAGCGCTCCGCCGCAGAACAACAGCCGACGCGCAGAGACGCATCACTGATTTCTGCTGCCAGGCTTCATGTAGCATGCGACTTTCCTTGCTCTGCCCGTCTGCAGCCTGACTTAACAGTGGGATTAAGAGAAAGGCTGCAGTGGACGCCGGTTCTCTCAGATGCCATCGTCTAAACGATCAGGGCACCATGAGCAGATCGCCGCAGTGTGTGTGAATTTCGTacctgggatttttttttagcctaaAACTGCCACACTGGACATTGCTTTCATTCTTGACAAGCGAACAGCTCGAACGAGAGCCTCCGGCAGCACCGGGAAGGGAGGACACTGGGGCTCTCCGTGCGCTCTTCTGGCCGTTCACACGATGCGTCTGCTTCTGCTGGCCGCGTTATTCTCCTGCTCCTGCGTGCGGGGCGGCTGCGAGCCCAAGATTGTGAACATCGGGGCCGTCCTGAGCCAGAAGAGATATGAGCAGGTGTTCAAGGATGCGGTCACGCAGGCGAACCAAGTGTACGGAAGGGATAAATTCAAGTTGACCGCCATCTCCGTCACTCACAAAGCTAATGCGATTCAGATGgcgctgtctgtgtgtgaggaTCTCATTTCCAGTCAGGTGTACGCCATCCTGGTGAGCCATCCACCGCAGTCCAATGACCATCTGACGCCGACTCCGGTCTCCTACACTGCAGGGTTTTATCGAATACCAGTGGTAGGGCTCACCACCAGGATGTCCATTTACTCAGACAAGAGCATCCATCTCTCATTTCTCCGCACAGTGCCACCCTATTCCCACCAGGCACATGTGTGGTTTGACATGATGCGGGAGTTCCGCTGGAATCACATCATTCTAATCGTCAGTGACGACCACGAAGGCAGAGCGGCGCAGAAAAGACTAGAAACTCttctggaggagagagagaccaaGaataaaaaaaggaactaTGAAAACCAAGACCAACTGTCCTATGACAACAAGAGAGGACCTAAGGCCGAGAAAGTGCTTCAATTCAACCAAGAGACTAACTTAACTGCCCTGCTTCTGGAGGCCAAAGAGCTGGAGGCCCGAGTGATCATTCTCTCTGCCAGCGAGGAAGATGCAGCCGCCGTGTACAAAACAGCACGCTTCCTCAACATGACAGGCTCAGGCTATGTATGGCTGGTCGGGGAGCGTGAGATGTCCGGTAAAGCTTTGAGCGAGGCCCCTGACGGGCTTATTGGCCTCCAGCTCATCAATGGCAAGAATGAGTCGGCACACATCAGTGATGCCGTTGCTGTTGTAGCCCAGTCCATCCAAGAGCTCtttgagaaagaaaacatcacAGAACCTCCAAGGGGCTGCGTGGGCAATACCAACATCTGGAAGACTGGGCCACTCTTTAAAAGGGTACTAATGTCTTCCAAGTACCCAGAGGGCCTAACTGGACGTGTTGAGTTCAATGATGACGGTGACAGAAAATATGCTCATTACAGCATTCTCAACTaccagaagagcagactgattcAAGTCGGCATTTACAATGGAACACAAGTGGTGATGAATAAACAGAGGAAGATTATTTGGCCTGGAGGTGAAACAGAAAGACCGAGAGGATTCCAGATGTCTACTCGTTTAAAGATAGTGACCATTCATCAGGAACCCTTTGTGTATGTGAAGCCAACTATGCTGGACGGGACCTGCAAAGAAGAGTTCACACCTAATGGAGTCTTAATTAAAAAGGTGATCTGCACTGGACCAAATGAGACCATCCCAGGACGCCCAATTGTTCCCCAGTGTTGCTACGGATTTTGCATTGACCTTCTGATCAAATTGGCAATGACCATGAACTTCACCTACGAAGTACACCTGGTGGCAGATGGGAAATTTGGAACACAAGAAAGGGTAAATAACAGTAACAAGAAGGAATGGAACGGTATGATGGGCGAACTCCTGGGTGGCCTTGCTGATATGATTGTTGCACCTTTGACAATCAACAATGAACGAGCCCAGTACATAGAATTCTCCAAGCCTTTCAAATACCAGGGATTGACTATCCTTGTTAAAAAGGAAATACCTCGCAGTACACTGGACTCATTCATGCAGCCTTTTCAGAGCACACTGTGGCTACTGGTGGGTCTATCGGTGCATGTGGTGGCGGTGATGCTTTACCTACTAGACCGGTTCAGCCCATTTGGAAGGTTTAAAGTAAAcagtgaagaagaagaggaggatgcCCTCACCTTATCTTCAGCTATGTGGTTTTCCTGGGGCGTCTTGTTAAACTCTGGAATTGGAGAAGGTGCCCCACGTAGTTTTTCAGCGAGAATCTTGGGAATGGTGTGGGCTGGCTTTGCTATGATCATAGTAGCATCCTATACTGCCAACCTGGCTGCCTTCCTAGTGTTGGACCGGCCTGAGGAGCGCATCACCGGCATCAATGACCCAAGGctgaggAACCCATCAGACAAGTTCATCTATGCCACAGTGAAGCAAAGTTCGGTGGATATTTACTTCCGGCGACAAGTTGAGCTGAGCACCATGTACCGCCACATGGAGAAGCACAACTATGAAAGCGCCGCTGAAGCCATCCAGGCTGTTCGGGACAACAAGCTGCATGCTTTCATCTGGGACTCTGCGGTGCTGGAGTTTGAAGCCTCGCAGAAGTGCGACCTGGTGACCACGGGAGAGCTGTTTTTCCGTTCGGGCTTTGGCATAGGCATGCGCAAGGACAGCCCCTGGAAACAGAATGTGTCCCTGGCTATTCTCAGTTCCCATGAGAATGGCTTCATGGAGGACCTAGATAAAACCTGGGTGAGATACCAGGAGTGTGACTCAAGGAGCAATGCCCCAGCCACACTCACCTTTGAGAATATGGCAGGTGTCTTCATGTTAGTTGCTGGAGGCATTGCAGCTGGGatcttcctcatcttcatcgAGATTGCATATAAGCGCCATAAAGACGCCCGCAGGAAGCAGATGCAGCTAGCCTTTGCGGCCGTCAATGTTTGGAGGAAGAACCTACAGCCCTCTTCCTCTGTAGAGACTCAGGATgatAGAAAAAGTGGTAGAGCAGACAGCGACCCAAAAAAGAAACCCTCTTTTAGGTCCATCAGTACCACCCTGGCCTCCAGCATCAAGAGACGTAGGTCCTCCAAAGACACGCAATACCCACCCACAGACATTACGGGCCAACTCAACTTGTCCGACCCGTCTGTCAGCACGGTGGTGTGAGgcagagaaagagggagagttTAACATAAAGACATGCTCATTCTTTAGAGACAAACGAGATGGAACTAGAGAGGAGCGTTGTAGTACCGTTCCTCTAGGTTTTGCACAGTGGATCCATCACGGACGAGAACTACTGAGCCACTTCACCTTTATGAAGAGCCAATGGGACCTGTTGGGATTTCATGGTGGACTGCAAGGGATGGCATGACCCTGCAACGCACTGGAGCACTGCGAACACACAGaccatataaacacataaacacatagaCCATCACAGCTTGATGCTAAAATTAGTATACTATCATTCCATCCACCAGTACTTCTTCTGTATAAATTCTTTATGATTAtgtagaaatatttcttattagtATTAGTGCTTATTCTTATGTTAAGTGGTTTAAGTATTGTACAGTATAATTTAGAACAaggaacaaaacatttcatgttGCAAGGCCGATTCTACGGCCGTTATTTAGACAATTAACTAGTTGTAGTACGTATTAGATTAATTACATTCATCATTTGCATATGATATTTATCTTCTAtaccatttttattgttttatttgcgtTCGGctcattgttttttattctttgtctATATAATCTATAAAGGCAAAATGTCAGCCAATCAAGCACATGATCTGTGCTGTTTCATATATCATTGTCTTTCATATTCTAACATCCCTTTGCatgtaatatgcatgcaaatttgTCCCTAAAGAATTATGGACaagaaaaatacacagtatTACCCCCCTCCACATATCGTGGAAGAGGCATTCAACGTTTATATTTAAGATGTGGCTTACTGCACATCAGTTAATTGCAAACTCTCCTTCAAAGTTCTTCCTCTTTAAACGCAGTTGTTCTCAACCTTAGTCTGAAGGGTGCATCAAGGGGCCGAGTTTTTCATCCAACTAGCACTTGGCTTCTCATGCAAAATCGTCTCTATGTGTCATCTCCACAGATGACCTCAGAGATATTTTACATGAGAAAACCCCAAGTGTgcccttttattttcaatgctgGTGCTGTATTTTCGTATACACCTATTAGTTAGATGGCAAAACTGGCCCGTTCCCAAGTTCTGGGGTTGAGAAACATCAACAAAAGCTATACAGATAAGGACTGCTTACTGTAAATGTTCGCCTAATGCTATTTATATTACCCATGGAAACTCCCCTATAAGAGAGATCATACCCAGCACTTTAATGTGAATCTGTCGGAAGCTATACGCATATGGAAATTATGCAATTTGCCAAATGTTGATTGTAATATTCATACTTGAtatgaaaatgcacatttgaGAATGCGAAATATGTTATATGTAACTGTCAGCTGTTTGAAATTGACAAAACACTCCTTTTCTAGATTTCATTTATCAAGAGatttacatttgtttctgaTATATCAGAGGTAAACTGTTTCGAGTGCATATCATATATATCTTCTGTTTACTACTATAAGCTTACACTACTTTAGGTTTTAGTATTTTCAAACTGACAggtgtatgtacagtatgtttttcTCATTGTTTGGGTCAATGAATgtggtttgtacttcagaagaAAGATGTATTATATCTGATTTCAGGGCATGTGAACACTGAATTCAGTTTATGTTGCCTGGACTGCAAGATTGCAGatgattttaagaaaaattgaaaaaagggAGTGTTTTTATGAGAAACTGTCACATTGTAAATGACAAACACAATTAGATAAATAGCATCACATACAGTGACACACATATCCTGAGCATAAAAGTGTTACTTTAATAAGTGCTTCATCATGTTTCGGTTCATTTTAGATATATCTTCAATGCATTTTGACAgaatatatagaaataacatttctgtgtgCCAATAAATTTGTGCCATGTCAGTTGCAGACCACAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211038 lncRNA upstream 106662 916621 ~ 916963 (+) True G142866
TU210993 lncRNA upstream 211568 759275 ~ 812057 (+) True G142832
TU210980 lncRNA upstream 217519 735722 ~ 806106 (+) False alpk2
TU210959 lncRNA upstream 297033 726258 ~ 726592 (+) True G142807
TU210850 lncRNA upstream 589503 431624 ~ 434122 (+) True G142729
XR_006247435.1 lncRNA downstream 367 1048378 ~ 1050268 (+) False LOC122326171
TU211139 lncRNA downstream 510 1048521 ~ 1050225 (+) False LOC122326171
TU211141 lncRNA downstream 510 1048521 ~ 1081301 (+) False LOC122326171
TU211143 lncRNA downstream 22350 1070361 ~ 1081301 (+) False LOC122326171
TU211152 lncRNA downstream 24257 1072268 ~ 1074041 (+) True G142941
XM_043221222.1 mRNA upstream 8325 1005795 ~ 1015300 (+) True zgc:92275
XM_043221175.1 mRNA upstream 18535 999224 ~ 1005090 (+) True LOC122326352
XM_043221176.1 mRNA upstream 25548 991991 ~ 998077 (+) True LOC122326353
XM_043221177.1 mRNA upstream 32992 985437 ~ 990633 (+) True gtf3c5
XM_043221937.1 mRNA upstream 75341 942853 ~ 948284 (+) True arid6
XM_043220937.1 mRNA downstream 2827 1050838 ~ 1055925 (+) False entpd2b
XM_043220936.1 mRNA downstream 2830 1050841 ~ 1055925 (+) True entpd2b
XM_043220748.1 mRNA downstream 8320 1056331 ~ 1063140 (+) True zmat1
XM_043220927.1 mRNA downstream 16831 1064842 ~ 1068363 (+) True cd8b
XM_043220861.1 mRNA downstream 26238 1074249 ~ 1077136 (+) True cd8a
XR_006247444.1 other downstream 2827 1050838 ~ 1055347 (+) False entpd2b
TU211153 other downstream 105098 1153109 ~ 1156142 (+) False glrx
TU211154 other downstream 105098 1153109 ~ 1156142 (+) False glrx
TU211224 other downstream 180002 1228013 ~ 1229045 (+) False LOC122326311
TU211695 other downstream 1185648 2233659 ~ 2237195 (+) True G143321

Expression Profile