RNA id: XM_043221313.1


Basic Information

Item Value
RNA id XM_043221313.1
length 6111
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122326433
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5489878 ~ 5499593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAGTGAGTAGAACCATCGCAAATATACTGATGTCCTAATTACAGTGTGCTGCtgtacacatgcatttttttttttttcatgcaccaTTTTGTACccatttttcaaatattccaGATGTTTGGGAGGAACGAGGAgaaagtcaagtcaagtcaataATGTAcaatcagaatgattttgtaaattaatatttcaaggTAAACGCTTACAGTTGGTTTAGTTTTACCTTTGTGGTAGTTTGATTACACGTAACGAGCTCAAAAGCAATCCAGGACATTATCTTTTAACCTAAGGTGAGATTcgtatgtgcatttttttttttttatcagaatgaTAGCACACTGGCtgtttaaaatcaaatgaaataagTATAAACTAAATCCATCTTTGGACTAATGTAGCAAGATTTCCAACACTACTGTACACACAATATTCAGTAGGAATTTTATTGAAAAcgatttacaaataaattagcaaataaagataatttacgataatttaatttaatttataacgGTGGGGGTGGCTTCCAAAACACATTGGCctttgacaaaaaatatattttatgttttgcacaTTAAAGAAAGTAGGCTAATTTGTAAAGAATATAAACTGATCAGATTTTTAAGTAGTCCTATGGTTTAACCCATATATTTTTGAGTAATATATTTTGGTAATATATACCAAACTATAGTGACTAAATATCTATCTTTTGAAAGCATCATCCAAACTTCACAAAACTTGGTACGATTAAGCAACaggatattttgatgaaagagccattttttttaaaaacatttctttcaaatgtgAATAACCGACAAGGGCCTGAATTCATTCATGAAATAAGTTTTTAAGACGTTTGATTAAAACTTGCAATTAAATTGCCATTGAAACACGCGGTTGAGATTGAGCAGAAGGATTTTTAGCTAAAGTTCTGTAAGCCGCCATACAGAAAGtgaatcttttattttcagtttattgcAGTTCACATAACAGCATCATGTTGCCTGGAGCAAACAAGCACAGTACTAACAACAGCCAACAGACCAGACAACACAATCCCATCCTCTGTTCCATTCAGCTGCTGAAGAGCCCACACAGCTCTTCCCCTGCTTCCTCCTCAAGCTCGGTTGAATCGGAGCAGTCTGTACCATCATTTGGTCTTCCACAGCCACAGAAACATTTCAGATGACTTAAACGCATCAGGAAGGAAGATTTGTATGCTATCATCTTGGCTGCTGCTGCATATATCTTAGTTTCATGTGTAGGGACATTCAGAAAAACTTGGAATCCGGGAAAGATGGCCGCATGGTTCTGGGACCTGGATTATGCTACAACTCCTCCACAGACACCAGCTCTACACATCAGCCATTCTAGCCCTGTGAGGGAAAGAAGAGGCCAAAGGGAGGGTTTACAGGACCAGCAGAGAGTGCCTTACAACAGCCTGCCAAGAgcGCATTTCCTCCAGCCAAATAGAGAATCAAGTGCTTTTTCACCCTATGCTAATGACTTCTGCTTGAATGGTAGAGATGCCAAGAACATTGCTGAGTCCCCCAGGAGCGGTCGTAAGCTGCACCCGCTGACACAGCCGGGCTTCTACAGTCCAAAAATCCCACGATCAAAACACTGTGAAGCTGCACAGTCCACAAAAACGTCTTTAAAAGGATCTTCTTCTACGAACAACTTGAAGGAgttctttgctctctctttgcCTCTTCCGTGCTCCAAAACAGCTGTCCTTGAAGCCAGcCCTTTGTGTTCCAAACCACAAAAAGTTAAAACTTTTGTGGTGGAAAAGCCGCCTTTGATGAGAGCTGTGGTTTCGCAAACTTCGCCGACCTCAAATCCACCTGACAAAGAGCTCTTCAGCCACCTCCAGCCGAGAGAGGAACATCTCATCAAGCGCCAGGACTGCAGTTTGTTCAGTCTGCAGGAACCCAATAGGAGATCTCTCAGAAACGACCAGCCTGTCTGGAGTCAGAGTCAGAATTTGTTCACTGAGGAAATTTCTACCAAGGATCGTCTCTCTATTAACACATTACATCTGTTCCCTGAACGCCAGTTTATAGCAAACCAGCCTGCGACCCTTTGTCCAGAACTGGAAAAGGGAAGTCATGAGAGATTTACCTGGAGTGTTGACACTGACATTAACTTATCTCAAGGTGACCCTGACCGGTCAGGTCAACTTAAAGCCAGCCAAGCTAAACATGACTGCAACCCAAAACAAAAGAAGACACCGTACACACAACATAGAGAAACCAGTGACGTCAGAAACAATGAACACAACCGTGTAAAAAGtCAGGTGGATGTGAGCTCAAGGAATGTGTTTGGTCAGCCTCGGGTGATTGCATCACTGCGAGCAGCATGTTCCCCGCGGCCCGTTCGCAAGAGCTCAGTGGTGGAGGAACTGAAAAAACTCATTGTGATGGATGACACAGAGGACAGCGCTCGGGGCGATTCATCATCTCCTCAACAAAAAGAGGCAAGGCTTTGCAGCGGTTCGCAAATGTCAAGTTCATGCGCAAGTTCGCCGTTATTCGGTCAAGCTCACCAATCATACCCAGAGTCTCCCCAGCTCACACCCATCCATCTCCACCAGCAAACACATCAAACAGAATGCGTAGCATTGCCTGAGCAAGCTGAATCTGACCTTTGGGACGGAGATCAACATGCTGATCCTGAACTCTTGCCCCTGCCAGACGCAGCTTGTGATCTAGACTGGAATAGTTTAGTTCAAGCAGCCCAAGAATATGAGACACAAAGGATGGCAACCCTTTTGTCAGAAATGAGTCCCGTATCAAGCAGACCAGACACACCATCCAATGGAACCTACAAGATCCACCAATCCAGTGCCTACTGCAGTGGAGAAGATATGGACAGTGATATATTTATTGACTTTCCTGACCAACTCTCTCACCTGGAAGGGATGCTTAGGCGACTGAGCAGTGATCTGCTGAAGGAGAAGAGAGACAAGGTGGCTCTTCTGGCAGAGGTGTTGAAGCTTCGCATTAGCAACCAGCATCTAAGAGAAGAGTCCCTTTGTGCAGTTGCCCAGCTACACAAAATCAGCAAAATTTTAAACACGACACCTGGAGAGATGGAGTAATGCAGGGTTGCGAGCAAAGTCTACAAGTCTGGatatctgctttttttctttttttgcgcTGATTTGGGAGGTAAAAGTCTGCAGAACGGATGTAAACGTGTAAAGACGTGATACATGAAGCTATTGCTGACTGAACGTTTTGTCAAATTTATCCAAACTATGTAATGAACAAACGCGTTTAGGGGCGGAGGTTACGTAGTAACGCATGAAGCAGCCTGCAAATGACAATGTTTGAGTTCTTTCGAACCTTTAACTGGTGCAGCTTGAAAACCCAAACAAACTGAACTCATTTAAGGTTTATTAACAGCACAGCACAAACCAGAACAACTTTCATGAGGTTGGTAATTCTCTTGGGAAACATGTTAGGGGTCCTCCAAGGCTTGTACTGAATAATTTAagactatataaaaaaaactgatagaaagcttaatattaacattataataaatatataaatatatgaagatAGATAACAGTTGCCATTTGTTATAAATAAGTCATAAAAATCCAAAAGTTTAATCTAACAATGTAAAGTCACAgtgaaaaatgctgtaaactctaaaatgtaaatatgctctatgatgttaaaaaacagtagaacaataaaaaatatacttaaaacacaataaattagttattttaaaatccctGAGATGCAATTGTGTTAAATCACAACAGTGATTAACCTTAATAAAACTGTATTGAACTATACAGTGCAGTGGTTTAAACACTAATAGTCTATGTGGTTTGCTTCTCTTTCAAGCGTGTTCTCAGTGCAGTATGTATTCGAGATGTGAAGACCTTCATTTGACAGCTGCGTACTTGTCTCTATAGGCCAGTAACATGTGCAGTGGACTGGGCACAAAGCGTTCTGCCTTCATTTCTGCCTCGTGTTTTTGAGCGCGTACATTGCGGTTCTGCTGGCAACTGAAGCTCCAGGCTTTCAAGCTAAAAGCAGAGAGAGGTTTATGTAAAGTTTCATTGCAACAGACAAGTCTGAATGAAGGTTGGAGAATACCTACCAGTACAAACGTCTCTCCTTCTTGGGCAAGATGTGCCACAGACTGGCTAACTCTTTGGTGACCGTAGTGGACGGGATGCCAGGATAGGATCTGTTCCGAAATAACATCAGAAGTCTGccattatatatttgaatatatttaaatgggTCTAATAGCTGTTTCATCATcgaaagaaaatatgaaataatactcATACACACCTGATATATAATTTTCTGTTAATTCGGCAAAACATAATGAAGCCGTTCACACATTTCTTCTTGGGGTTTGGCTTTGTCGCAACATGTCCTCTTCTTGAAGTACGCCTGTGTGAACAGACTTTTCTTGCTCTCTTCAGAGGAGCCAGTTGGTTTGGGGTCTCATCTTCGTAGCTGTTGTTCTCTTCCTCGCTCTTGAAGGACAGATTGCTGCCGCTTCCAGCACTCATGACAATCTGCCAATTTGGAGAAGAGATCATTAAAATTGCTCGAATCTAATATACAATAGGGGTCCAAAAGTCAATTAGCCAAAATGCTTatactttgtttgttttgtaaaacagtTTAACCCTCAAAGACCCAAGCATTTTCACGatgtattatatattcaaaatgtcttaatgaaaCCATTTTTAGACAGAATTTAAATGTTGGTTGGTATTTAGGGTTGCAAATTTGGGTCTCTGAGGGTTAATCTCGGATTTTCATTGGGATCTGTATATGCAGGTAAAAAAAGAATCCAAAAATATGGCCTACTGATTCATTTGAAAAGCCGCCCGGCAAACTGGGGCTTTTTAAGACGGTAGATTCTGGGGTGACCCACACGTCCTCGAATAATGCTGTTAGGgtaaaaaatattgttcagTCAGCAGTTGTTTGTAATTTCACACGGTGCACATTTGGCTCCAAGCTGATTTTGCCTAACCTCctaagttttaaataatacattattcatAAAACAACTAATGCATCTATTTAATACATACATGATCAGAAAACAGGTACAAAAGTTGTCAATGAGGTGGTACCATTTTAAAAGGCACTGATATGTACCAATTTGGTGCAAATATGTACACTTGATGTACTAATATGTAACTCACCAAAGAGTAAATTAGGTACAAAGGTGTACTTTTtaaagtgacagcttttgtacctttttaatGAGATTGTAGTATACTTGCTAGTCTATAATTAGCATCGAATTAAgcaaataatatacagtatgcatagttatttttactttgtagCGCCTCTCGTCCTTCTGGATGGAGAGAACGGCTCAGGCCTTGAGATGGTGATAAGATCAGAGATGGGTTGAGGGTCAGGCTCTCTGCTTCCCGAAGAGTTGGACGCAAAGGCACTACTGGCGTTTTTGGCAGCGTTGGGCTGAAAGGAAAATGCTTTTTCCATGCAGCCGGAAAAGCTCCAAGCATGGGGTCTTTCAGAAGAATTCCTGATCTGAAGACATAGTAAAACAGCTACCTCTCAAGCTGTCATTTCTCTGTtcataatcataaaacaaatattcaatataCAAACCTGGATGGAGGCGTATCCTGTATATTTCGCCCTGGGCTTCCatcttcacttcctgtctggtCTTCACAGAAACTACAACTAGATTCAGCCTCAGTGCTCCCTGATAACAAAAATAACCCTGAGTATCCTTTAAGTTTCGGAATATGGATTTAATTGATATCTAACCCCCAAAAAaggcaagattttttttcacctgtATTGAAAGAGGAAGTTGTGGAGTTGGAGTCTATAGAGCTTTGTGATGGCTCGCTGTCATCAACAGGCCACGAGTCCTTCTCCTCTGCAGTTTGAACTTCTGACAAACTGCTCTGTCTGTCACACACAAGCTTGTGTTCTTGCTCCTCCACGGCATTTACGATAAACCTCTCAGAGTTTTTGCTCTGTGGGTCCCCCTTTTTGTCACTTAATCGTACTGTTTGTGAATGTATGTACGCAGTAGTgtaagtgaaaataaataccGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212722 lncRNA upstream 114956 5366192 ~ 5374922 (+) True G143990
TU212747 lncRNA upstream 161473 5327230 ~ 5328405 (+) True G144007
TU212653 lncRNA upstream 337989 5151557 ~ 5151889 (+) True G143937
XR_006247500.1 lncRNA upstream 375594 5111482 ~ 5114284 (+) True LOC122326722
TU212636 lncRNA upstream 383652 5103857 ~ 5106226 (+) True G143926
TU212861 lncRNA downstream 2440 5502033 ~ 5517936 (+) False kcnk12l
TU212867 lncRNA downstream 38607 5538200 ~ 5539464 (+) True G144081
TU212929 lncRNA downstream 132448 5632041 ~ 5632851 (+) True G144126
TU212933 lncRNA downstream 185235 5684828 ~ 5685097 (+) True G144129
TU212934 lncRNA downstream 205947 5705540 ~ 5706835 (+) True G144130
XM_043221318.1 mRNA upstream 116 5482487 ~ 5489762 (+) True itpkca
XM_043221319.1 mRNA upstream 116 5482487 ~ 5489762 (+) False itpkca
XM_043221320.1 mRNA upstream 116 5482488 ~ 5489762 (+) False itpkca
XM_043221317.1 mRNA upstream 8097 5475234 ~ 5481781 (+) True ccdc61
XM_043220934.1 mRNA downstream 1511 5501104 ~ 5506433 (+) False qpctlb
XM_043220935.1 mRNA downstream 1512 5501105 ~ 5506433 (+) True qpctlb
XM_043221725.1 mRNA downstream 6953 5506546 ~ 5508393 (+) True sdhaf1
XM_043220717.1 mRNA downstream 12363 5511956 ~ 5517543 (+) True kcnk12l
XM_043220917.1 mRNA downstream 24987 5524580 ~ 5530203 (+) True rtn2b
XR_006247485.1 other upstream 464250 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other upstream 464250 4947584 ~ 5025628 (+) False tnksa
XR_006247451.1 other upstream 579373 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 758997 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 780437 4705201 ~ 4709441 (+) True btc
XR_006247443.1 other downstream 1510 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 6962 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 9072 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 232847 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 232847 5732440 ~ 5734253 (+) False neu3.1

Expression Profile