RNA id: XM_043221316.1


Basic Information

Item Value
RNA id XM_043221316.1
length 2196
RNA type mRNA
GC content 0.48
exon number 13
gene id ccdc61
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5475234 ~ 5481781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCCGCTGTTTTCAGTTGTTCGAGCTCAGTAACGAGTTTACCGAACATGCTTTCGATAAATTAATAgagatttgcatttgttttctatttttttaaaaaaacccatttcaTCGACGTTTTAAATGTAGAGTTTTAATCGAACAGCTCGTGCCTGCCTAACACATTTCCACCAATAACGGGCTGCCAGTGGCAAGCGATGGAGGTTGGCACAGTTGTGCAAGAAGAAATGAAATTTCGGGGGGCTGAATTCGCTGTCAAGGTCGAGCTGGTGGAGCGGCTACTAATCGTAGAGATTTCAGATGTTGTTACAGCAGACCAGTGGAGAGGAGAGTTTGATCCTGCCTatATTGAAGACCTGACCCGGAAAACTGGGAATTTTAAACAGTTTCCAGTATTCTGCAGCATGCTTGAGTCTGCTGTCAACAAGTCCAGTGAATCAGTGACCCTTGACCTCTTGACCTATTCCGACCTCGAGCTTCTGCGGAACAGAAAGGCAGGTGTCGTTGGCCGACCTCGTGCTCAGCCACAGTCTCCTGCCCTCAGCGCTAAACGATACCTCATCCTCATCTACACTGTGGAGTTTGACAGgatACATTATCCACTTCCACTTCCATATCTGGGCAAACCTGATCCTGCAGAGCTTCAAAAAGAGATCAGAGCTCTGAGGGGCGAGCTGAAAACACTGGGGCTGAGAGGAGACTACAAAGTGTCTGACCAAGAAACACGCAAGCTCCGTGCAGAGTTGGCTTTGGCGAGAGATGAAAAGGAAGCCTTAGCCAAGGCTCTGGATCATCTACAGATGGTGGGGCCTGGTTCCGCTCCTGGGTCTCGTGGGCTTAGAGAGGCAGTGCGCAGCCTGGAAGAACAGCTGTTGAAGGAAAGGGCAAAAAGCCAGCGCTCTGCAAGCAAGAGGAGCCAAGAACAGCGCCTCCTTCTGGAACAGTTGGAGGAACTCAAAGCATCAGAACGGGCTTTACGGATACGTGTTAAAAGTCTGACCACTGAGCTGGCCTTGTTGCGACGCGGTCGAGCGACTCCAGTCATGTCTGGCCGAAGTAGTCTCAGAGGTGATGGAGAAGTTCATCGGTCTTTATCCAGAGAGCGCAGTCTGACCCGTGTGGGGGTAAGAGCGCGCTCGGGGTCGAGGGAGAGGATGGAGGACAGGACTCGGAGATCAGAGGAGAGAATTAGGAGGGCAGACTCTTCAGGGTCTCGAAATTGCATCACAAGACCCTCGCCATCTCCAACAGGGTCGCGGGTGCCTCGGTTTGACCCTACGGCCTACATTCAAGATCGACAACGTCGCCAAAAAGAGGCCGAGATAAAGAATCAGAGGAAGATTAGAAGGGACATGTTGGCTTCACCGTCTCTGATGGAAAGAGGCCGTTCACGCTCCAGGGAGCCTGTTCCTCAGCTGATGAGAGCAGGAAGCGCTGGCAGGGGGAGGAGTGTGTCTGTGGAGAGCAGGAGGAGTCGGTGCTCTTCAGAAGGATCAGTAGCTGAGTTTGAGGAGCTTGCTAAGCCTCTAAATAGCAGaGGAAGGAAACTGGCATACAATGGTCCAGCTGTGGCCAGAGGACGCCACATAAACAAAAAGCCAATGTGTAGCACCCCAGCCCAGAGGATGAGAGGGGCAGACACATCTATTGAGACGGGTGCTGACCTGTCAGAGATTGACGCTCGACTCCAGGCCCTGCAGGACTACATGCGGGATCTTGACACTGGACGTTAATCTCGGTGGATTCAACTGTTGATCTAGGCTTTTTGCACAAAGACTGAAAACTTGGAcaatcatttcttttaaacactGTGTACAGATGTGTCTGTATCGTAGTCATTCATACTAATGAGACTTTGTTTCCTTTACCCCAAATGTAACTTTTGGGCTTGACTCAAAATGCAGTTACAGTGGTTTTGTGAAGGGGGTTCTTGAGACCGTTGCCATATCAGACTTGAAGTAAACCAGAAGTGTCCCAAAGTATGACCTCAGGATATACCATTTTTAACACATTcctgtgtacatttttattaattagtgtttgtttggccattgttattttgttttggggtttttttaatatgtgttaGTGTCTGTTTTATGTCCATTTTAGATGCTCTCATATTTTGTTGTCGtgagaaactgaaaaacaaagctttttttctatatacatacataaaaggATTTTGCAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212722 lncRNA upstream 100312 5366192 ~ 5374922 (+) True G143990
TU212747 lncRNA upstream 146829 5327230 ~ 5328405 (+) True G144007
TU212653 lncRNA upstream 323345 5151557 ~ 5151889 (+) True G143937
XR_006247500.1 lncRNA upstream 360950 5111482 ~ 5114284 (+) True LOC122326722
TU212636 lncRNA upstream 369008 5103857 ~ 5106226 (+) True G143926
TU212861 lncRNA downstream 20252 5502033 ~ 5517936 (+) False kcnk12l
TU212867 lncRNA downstream 56419 5538200 ~ 5539464 (+) True G144081
TU212929 lncRNA downstream 150260 5632041 ~ 5632851 (+) True G144126
TU212933 lncRNA downstream 203047 5684828 ~ 5685097 (+) True G144129
TU212934 lncRNA downstream 223759 5705540 ~ 5706835 (+) True G144130
XM_043221227.1 mRNA upstream 825 5466514 ~ 5474409 (+) True lifrb
XM_043221223.1 mRNA upstream 8847 5443111 ~ 5466387 (+) True rictorb
XM_043221224.1 mRNA upstream 8847 5443111 ~ 5466387 (+) False rictorb
XM_043221225.1 mRNA upstream 8847 5446183 ~ 5466387 (+) False rictorb
XM_043220994.1 mRNA upstream 110193 5361958 ~ 5365041 (+) True ndr1
XM_043221318.1 mRNA downstream 706 5482487 ~ 5489762 (+) True itpkca
XM_043221319.1 mRNA downstream 706 5482487 ~ 5489762 (+) False itpkca
XM_043221320.1 mRNA downstream 707 5482488 ~ 5489762 (+) False itpkca
XM_043221311.1 mRNA downstream 8097 5489878 ~ 5499593 (+) True LOC122326433
XM_043221312.1 mRNA downstream 8097 5489878 ~ 5499593 (+) False LOC122326433
XR_006247485.1 other upstream 449606 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other upstream 449606 4947584 ~ 5025628 (+) False tnksa
XR_006247451.1 other upstream 564729 4899490 ~ 4910505 (+) False fybb
TU212485 other upstream 744353 4730603 ~ 4730881 (+) False slc45a2
TU212480 other upstream 765793 4705201 ~ 4709441 (+) True btc
XR_006247443.1 other downstream 19322 5501103 ~ 5505224 (+) False qpctlb
TU212862 other downstream 24774 5506555 ~ 5508295 (+) False sdhaf1
TU212863 other downstream 26884 5508665 ~ 5510746 (+) True G144077
TU212943 other downstream 250659 5732440 ~ 5734253 (+) False neu3.1
TU212944 other downstream 250659 5732440 ~ 5734253 (+) False neu3.1

Expression Profile