RNA id: XM_043221386.1


Basic Information

Item Value
RNA id XM_043221386.1
length 3323
RNA type mRNA
GC content 0.46
exon number 3
gene id crkl
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4538262 ~ 4544632 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGACGGGTGATCAGACAGACCGGGAGCGCGCGCAGATCCGCCCTCCAGACGCCATTTCTCGGACGGTGTGGGGAGCTGAAGCAGCTTTTACACCAATCCTGGGAAGGAACGgcaaacacaacaaacagaaATTTTAGTCCTCTCGGTCGTCTCGTGGCGTGGCGGCGTCGTGCCTCGTATAGGGGAGCGCCGCGCAAGGAGGGAAACTTTCTCTTGCCAGATTGTTCTCAGTTCGTTGTGTGTGAAGACGTGTTGCGGGCCGCCATTTTTGTTACAGCCCTCGAAGTCTGTTGGGAGTCTAAATAAGAGACAAAAACTCTTCCGCACTTTGGTGTAATACACGAAGAAGGACTCGCTGTTGGACGCGACCGACATACGTCGCCTTAAAACATGCAGAGcgatttattaacatattatggCGTTGTTTGCCTCATCTTGAGCGGACGGTGATTGAGGACGGCTAGCTGGCTAACGCGTTATATTGTCTCATAAGCTGCAGCTACTTTCACGGAAGAGAGAGCGGAAAGGGGAACTTTAATTCTAAATACGCGTTTTTGGGTTCGTCGCGAACTTTTGGGGTTCTTTAAACCTGTTCTAAGCCCGCCGTGATTCTCGTGTTGGTGGAAATTTAGCGATGCATCAAAGTTGGTTGACGCCAGTCGCAGCCTGTCTGGTCAAACGTCAGGTTGCGGTTCAGTAGGGCTGTCGGATCAAGACGCGTGTGGTCTTTTGCAAGAATAGGCGTTTGtcgttttaatttattcattgtttccatttttgctttttcGAATTCGCCTGCCACCGTTGTATTTTGAGCAAACATGTCGTCTGCGCGGTTCGACTCCTCGGACCGAACCAGCTGGTATTTCGGGCCGGTTTCGAGACAGGAGGCGCAGAATAGGCTACAGGGACAGAGACACGGGATGTTTTTGGTGCGAGATTCCTCCACCTGCCCTGGTGATTATGTACTGTCAGTGTCCGAAAACTCCAAAGTTTCTCACTATATCATCAACTCTTTGCCGAACAAGAGATTCAAGATAGGCGACCAAGAGTTTGATAATCTACCTGGCCTTTTGGAGttctataaaatacattatctGGATACGACCACCCTGATAGAGCCAGCACCGAGGTACCCCAGTACCTCTCTGCCCAGTGGTCCGATTCAGCCATCCGGGGGCCTAGGAGATGAGAACCAGGAGTATGTCCGGACTCTTTATGACTTCACTGGTAGCGATGCTGAAGACCTTCCTTTCAAGAAGGGCGAAATCCTAATTATTCTAGACAAGCCTGAGGAGCAATGGTGGAGTGCCAAGAACAAAGAAGGCCGAGTAGGCATGATTCCCGTTCCCTATGTAGAAAAGTTGGTGAGGCCTTCACCTCATCCCGGTCAGCCCGGCCACGGTTCACGTAATTCCAATAGCTACGGCATCCCTGAACCAGCACACGCCTATGCTCAGCCTCAGACTCCATCGCCCATTCCTCCCATCACACCCGGCGCTGTCATCAACCCACTGCCTTCCATGCAGAACGGGCCAGTAATGGCAAAGGCGATCCAGAAACGAGTGCCATGTGCATATGACAAGACTGCCTTAGCGCTGGAGGTGGGGGACATTGTGAAAGTGACTAGGATGAACATCAGCGGTCAGTGGGAAGGGGAGGTAAATGGCCGGAGAGGTTTATTCCCTTTCACCCATGTGAAAATATTGGACCCCCAAAACCCAGATGAGAGCGAATGATCTGGGCCGTGTGCTGTCAGCACCCCTTCAGCTCGCCGGCCGCCCCATCAAGTCACCACCGGTATTACGCTTGCCTGCCTTGGGGCTCCGCCGTGGCGCATTTCTCAAGCAAACCATTTGCGTGGCTTCTGACTGTTTACAGCTCCCGAAATCAAACGGTTCTTAATCCCCCCTCACCTGGTTACAGGcgaatcagtattttttttttgtttgtgtgcgcgTCTGCccttaatattgttttgtttccacACATCGGCCAGCTGTACCTGTGACAAGGTGAATTGAGGCCTCCAACATAACCCGAGCCTTCTTGCCACTCTCCTGcagttttctgtcttttagCTTTGACTTTTGCCAGCTAAACTATGTTGTGTTAAGAAAGGGAAATTAGGTTCATTATATCCGTTTTGATTGAAAACTGTTCACCCAAATCCGATCTTTTATATAGTCGTTCGTTACATTTAAACAGAATCCAAGTGATACTGATCTGACTTTTGGTAACAGCCATGACTTGAAGATTTTCAGTGGCAGGTTCTTAGAGTAGCAACAACCGCACCACTCCTCCTGATTGACTCACcatttagtctttttattttctctgctAGTATGTGGGACTAGTCTACTGTAGCCTTTTTATTTGTGCCATAATAAATTATCTGTAAATTGCAGTAGTAGTGTAGCTAGATGGTTGTGGCTAGACTCTCGGGGGATCTTTTGAATGGTGAAGGGCTTGCCTGTGGAGCTTTTACATTCGATTGTGATGCCTTAGATGCGAGATCGGCTCTGGGGAGAGTGAAACGCACATCAACTATTCCATTGGACAAGCTGGAAATGTCACCTGTGCAATCATGAGCTCATCTCTCGAGGACTGGATTCAGTGTATTGATTGTCCTACTCAGTAAAGGTGGCAGTAAAACGTTTGGATCTTGCTCCATTTCATGAGCGTTACCGCACATCACAAGGTCTCTAGTTTTTGCCCAGTATGATTCAGTAACCTGATATAAACATGACACTTAGGTTTTGTCCATCTGTAATCAGTTTCTTTTATTAGCCAGGTGTTACTGTGTGTTGAAATAAACTGGCGTTTTCTAAAAAGGGATTTTAAAAGCCTGCTGGTGGCCTCTGCATGACCTTCTGGCCAAGAgagatttctctctctttggTTAAATGCTGCTTCATGTCAtgtcttttatttctgtctgttgatttctttctttattttttcagtttgaaattTAATTCACCTTTGTCTGGTTTACATCCCTAGCATCAAGTTAAGGCTAAACATCCATATTAAGCAATAGACCAACCCGTATCTTTTTAGAAATGCTCAAATAATTTAAGTTTCAAAtacatgaactttttttttgttttgtttttttcctaagGCTTTAACAGTATTACTGTTTATCGTTTCACATTACAAAATATCCATGTGGTCTCATTcgttgaaaatgaaaatttgtgccttttattttcttacatCATTTACatgtgttaataatatttcccaTGGTTAACACCCGTGCTGGTATTACCCATTATGTACAGAACGagtaaataaaatttatgtCTACTTCTC

Function

GO:

id name namespace
GO:0007520 myoblast fusion biological_process

KEGG:

id description
K04438 CRK, CRKII; C-crk adapter molecule crk

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212347 lncRNA upstream 14082 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 429584 4106801 ~ 4108678 (+) True G143725
TU212299 lncRNA upstream 451736 4075527 ~ 4086526 (+) True G143717
XR_006247456.1 lncRNA upstream 616543 3919733 ~ 3921719 (+) True LOC122326258
TU212219 lncRNA upstream 616983 3921080 ~ 3921279 (+) False LOC122326258
TU212360 lncRNA downstream 6789 4551421 ~ 4552468 (+) True G143745
XR_006247494.1 lncRNA downstream 18702 4563334 ~ 4578128 (+) True LOC122326582
TU212368 lncRNA downstream 44094 4588726 ~ 4589152 (+) True G143751
TU212488 lncRNA downstream 206585 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 207275 4751907 ~ 4752259 (+) True G143827
XM_043221211.1 mRNA upstream 14226 4520965 ~ 4524036 (+) True si:ch211-222n4.2
XM_043221210.1 mRNA upstream 17433 4510370 ~ 4520829 (+) True smpd4
XM_043221519.1 mRNA upstream 178959 4338972 ~ 4359303 (+) True LOC122326553
XM_043221521.1 mRNA upstream 206908 4287203 ~ 4331354 (+) True LOC122326555
XM_043221520.1 mRNA upstream 251837 4283196 ~ 4286425 (+) True LOC122326554
XM_043222093.1 mRNA downstream 9726 4554358 ~ 4557626 (+) True nefla
XM_043221560.1 mRNA downstream 36002 4580634 ~ 4583302 (+) True rpl17
XM_043221810.1 mRNA downstream 41258 4585890 ~ 4588458 (+) True nkx6.1
XM_043221811.1 mRNA downstream 41258 4585890 ~ 4588458 (+) False nkx6.1
XM_043221551.1 mRNA downstream 142284 4686916 ~ 4690339 (+) True abraxas1
TU212330 other upstream 152050 4132436 ~ 4386212 (+) True G143726
TU212324 other upstream 324490 4209260 ~ 4213772 (+) False G143725
TU212323 other upstream 424529 4106801 ~ 4113733 (+) False G143725
TU212191 other upstream 833865 3701429 ~ 3704397 (+) False G143650
XR_006247544.1 other downstream 36419 4581051 ~ 4581126 (+) True LOC122327010
XR_006247542.1 other downstream 37286 4581918 ~ 4581990 (+) True LOC122327008
XR_006247545.1 other downstream 38467 4583099 ~ 4583157 (+) True LOC122327011
TU212480 other downstream 160569 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 185971 4730603 ~ 4730881 (+) False slc45a2

Expression Profile