RNA id: XM_043221442.1


Basic Information

Item Value
RNA id XM_043221442.1
length 4216
RNA type mRNA
GC content 0.41
exon number 13
gene id hpse
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4698726 ~ 4704776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGCCAATCAAACGAGGCGTGCAGATAAATGAATCAGCCCGAAGCCACGCCCAGAAGTCGCTAGCGTGAGaggtatgtttttaaagaaaaaattgtcATGAACTGGTTTAACGAGAAAGAAGGAAGTAGTTTTGACGgtgccaaaaaaacaacaaacgaCATTTCGTCCGCATCTTTTTGACGAACGATGCCAGCAAAGCCCGAATAAGGACGACACCGGCGGACTGAACCGATGAAGTCTACGGCCACGGCGGTTTCCACAATAGTAGCTCTTGCTTTCTTTGGCGCATTGTACGTTGAGGCCAAAACAGTAATATCTGTTGATGATGCTCAGTCAATACGCGTCGATTTGGATCTGTCCCATGTCTCCCAACGGGTGGACGAAAGGTTTCTCTCGGTTGCCATAGATGCCAGTTTAATCGCAGAGGAGAAGTTCATGAACCTACTGAATTCACAGAAGTTAAGAACCCTTGCCAAAGCCTTGATCCCGGCTTTTCTGCGATTTGGAGGTACCAAACAAGATTTTATAAAATTCAGCCCACGCGGAAGATATTTTCAAGCGAGAGACAACAGCAGCAGCGCTGTTCTAGGGAAATTATGTGAGAGACTTGAATTGCCTCCGTTTCTGGAAAATAGGTTGAAGCAAGAATGGGTCCTACAGTCAAAGACTTTACGTCAGGAGGAACTAGAGggaaaatacaaaaagacaaaattttCTGAATATGCAGTCGATCTGCTATACGCTTTTGCAGACTGCTCTGGTTTGGACCTCATCTTCGGTTTGAATGCTTTGCTCCGAACCAGCAAAAACACATGGAACAGCACAAATGCAGAACTGCTGTTGAAGTACTGTGAGTCCAGGCAGTATGTGATGTCCTGGGAGCTGGGGAATGAACCCAACAGCTATGAGAAAAAGGCAGGGATCAGAGTGGATGGGTACCAGCTCGGTCAGGATTTTGTCCGCTTGCATCAAATCCTACGGGAATCGGCGCTCTACCACTCGACAGGACTATATGGACCGGATGTTAGTCAGCCACGAGATCACCGCAAAGATTTGTTAACTGGGTTTTTGGAGACTGGTGCAAAGGCCATTACTGCATGCACCTGGCATCACTATTATGTGAATGGCCGAGACACGTCTTTAGAGGATTTCCTTGACCCTGAAGTGCTTGATACTCTCGCAACGAAAATTAACGAGGTCCTCGAGATTGTTGAATCTGTCTCGGGGAAGAAGGTGTGGCTTGGAGAGACGAGCTCGGCATATGGTGGAGGGGCTGTGGGACTCTCTGACACATTTGTAGCTGGTTTCatGTGGCTGGACAAACTGGGGCTCGCTGCCAAGCTTGGTTTAGATGTCGTCATCAGACAGGTGTTAATTGGTTCTGGCACGTACCATTTAGTGGATGATAACCTGGATCCTCTTCCAGATTACTGGCTATCATTGTTATACAAAAGACTTGTTGGTCCAGAGGTCTTAAAAGCACAAGTTCTTACAAATTTCGGATCAAAGAAACCAATACGGGTTTACCTTCACTGCACTAACAGAAAAAGcacACATTATAGACCAGGCGCTGTGACCTTATTTGCCTTAAACctaaacaaaaatgaagttACGATTAGTCTGCCTGCGCGTACAACCAACAGCACAATTCAAGCATTTGTGCTACAATCAGCTGAGACTGGCGAACAGAGTCTTTATTCCAGGTCGGTCAAATTGAATGGACAAGTGCTAAAGATGGTGGACGACCAAACACTTCCTCCGCTGAAGGGACGTGATCTGCCGCCTGGAGAACGCATCAAGCTGCCCGGCTTCTCATTTGCATTCTACGTTCTGAGCGAAGCACAAGCCCCGGTATGCAAATGAGCTCTCGTAAAAGACAGCTTTCACTGGAGAATCAGGgatgatgacaaaatatttaGCTGTGACACTGTTTTATGTGAGGGAACTTCAAACTTGAACGAAATGATTCAGTCTGGTAATatataatcaacattttttatttacgaAAGTTCATATTTATTCTGGATTGAATCTGTTTTGCATCTTTTGAAATaaaccgattttttttttatcaaagtgcTCATTTGTCAGGACATCTTATTTGACAAGTTGAAGTGATCTATTATTTTCCATGCAGGCGTGAGGCCCTCTGCGCTTGCGGCAATCAAGCCTTTTGATTCTTAGCaattttctgtctgtgtgattcgcatctgtgtgtgtgtgtttagctaAATTTAGAGATGTATCATAAAAAGAACGAGACATTTAAGAATCCACTCAAATAGCAGGCATAAGACGTCTCGTTGCACTTGTTAGTCTATATTagagaaaaatgaaacatcTGGGATATCTTAAGTGATGACATGGATGgtataaatacagataaatatttcttgagtaATCTGGAAAAAGTTTgacttattttaatgtattgatGCGGCACGGCAGGTTTTATGTAATCATTTAACGTTAACATTTATGCTAACCGAAAAATGCATGGAAAGGGCATTataatttcttgtttttgtaaagtAATGACTGCGGTTTTATTTTACCAGCCACCTGTTAATAATAGCACATTGTTGAACATTGTGTATACTCTATGCTTAATTTTTTGTCTTGGACAAAAGCCCGAAAAAATTAAGCAGGGTTTGCCCCACCGGGTGGCGATGTTTGCCACTGTTTTAGGGCTGAATTAGCCTGGAATGACTTTGAAGCCACGTTACATAACTAGACCACAGACCTTTAAGACCACAAGCTTTATTCATTGTGGTTGAAGTTCAGCATTGTGAGGTTTGAGATTTGGATGAATACTTCTTCACCTTTTAATTGGTGTATCCTGTTGCCCAAAAATTTGAAGAGTTTCATTACAAAATACAACATATCTACATAAACAAGCCCATAATTCTTCATTTGGACTTTCTGTTATAAATTTGATTCATAATTTCAATATTATTGTAGTTagttcagttcaataaaattGTGCCTGTGTcctaatttagaatttttactcGAGTCATATTTGTATTCTCTCCTAATTTTTGTCCGTGATACGACTCTCATAGTTTCTCAAATCATTTTCTATAACCGAATTTTGACTGTTATCATAATTAGGTTTTTTATGCCatgattatgattttttttttaacctcctaactttgtctttttataattatgactTGCTGTCTGATAATTCCACATTTATCAAACATTCAACTTGATGTACAAACTggctgttaaaaaaattaacttcccctttttatttcatacgttttaaataaataacatgcaatCAGTCTGTACTACTTTCTAAGCACGTTTTGCTGAAGATCACGGTTTGGATGGCTCTCTCATGAACGAGCGCAGTAAGCCCTGCGGTGTCTGTGCTAAGTTGAGCGTGGCAGACGCTGAAGGGGTCGTTGTTTGCAGTGGCCCTTGATAATACGTGGCTTGTGTGCGACGAGCAGAGCAGAGTCTGGCAACCTCTGCCAGTCACACATCTTCTCCAGCTCCCCTGAGAGATCCCACGACCAATGAACACAAGCCCTCACTCCAGCAGTGTGCTGTGGCCACAGAGCCCTCTCAGCTTCATTAAGAGGCGCCGTCTGGAAACATGCGGGGGATTTAGGCAGCGTCAGAGATTTAGGTTACCCCTTTGGGCAACCCTTGACTCAAGTATTTCTTTACCAATGACTCAGTGAACCAGGGGGTTTCGGACGTTTTGATGCCATGTGACATATACGACGTGTTCATTTTCtcctgcattttttaaaatgtatagtcACTCTATTACACCTTACTCTTACAAATTGATTTTATTACTACTAAAAAGTCTGACAATGtaataaattagaaattaattcattttagtcttcaaaagcatgattttaaaaaagaaaccttaaaataataaaacaaaaacaatctctAAATGCgttaataaatcataaacacaCTTAGTATAACAGCCTACGTGAACTTTGGCAGCTGTAaatactttctctctctcttgaatTGTTTGTTGACCCCCTTGAGGGTTCAATAATCTGAAAACTTtgactggctttttttttttcttccttttttacttttcttccaagattgcatttcttttttcaacAAGATGTCAGAGTTGGTGCTCCTCCACTTCAAGATGGTATTGTGTGATGCTAGGCCATTGATTTTTCAGCACTCAAtaaaattttagtatttta

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K07964 HPSE; heparanase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212368 lncRNA upstream 109574 4588726 ~ 4589152 (+) True G143751
XR_006247494.1 lncRNA upstream 120598 4563334 ~ 4578128 (+) True LOC122326582
TU212360 lncRNA upstream 146258 4551421 ~ 4552468 (+) True G143745
TU212347 lncRNA upstream 174546 4511926 ~ 4524180 (+) False si:ch211-222n4.2
TU212327 lncRNA upstream 590048 4106801 ~ 4108678 (+) True G143725
TU212488 lncRNA downstream 46441 4751217 ~ 4751510 (+) True G143826
TU212489 lncRNA downstream 47131 4751907 ~ 4752259 (+) True G143827
TU212559 lncRNA downstream 95326 4800102 ~ 4862403 (+) True G143872
TU212577 lncRNA downstream 186362 4891138 ~ 4893087 (+) True G143887
TU212623 lncRNA downstream 309954 5014730 ~ 5028033 (+) False tnksa
XM_043221441.1 mRNA upstream 144 4692192 ~ 4698582 (+) True helq
XM_043221551.1 mRNA upstream 8387 4686916 ~ 4690339 (+) True abraxas1
XM_043221810.1 mRNA upstream 110268 4585890 ~ 4588458 (+) True nkx6.1
XM_043221811.1 mRNA upstream 110268 4585890 ~ 4588458 (+) False nkx6.1
XM_043221560.1 mRNA upstream 115424 4580634 ~ 4583302 (+) True rpl17
XM_043221443.1 mRNA downstream 381 4705157 ~ 4709034 (+) False btc
XM_043220714.1 mRNA downstream 15980 4720756 ~ 4729360 (+) True amacr
XM_043221907.1 mRNA downstream 25833 4730609 ~ 4745266 (+) True slc45a2
XM_043220879.1 mRNA downstream 49850 4754626 ~ 4757400 (+) True LOC122326163
XM_043221607.1 mRNA downstream 56389 4761165 ~ 4793419 (+) True rai14
XR_006247545.1 other upstream 115569 4583099 ~ 4583157 (+) True LOC122327011
XR_006247542.1 other upstream 116736 4581918 ~ 4581990 (+) True LOC122327008
XR_006247544.1 other upstream 117600 4581051 ~ 4581126 (+) True LOC122327010
TU212330 other upstream 312514 4132436 ~ 4386212 (+) True G143726
TU212480 other downstream 425 4705201 ~ 4709441 (+) True btc
TU212485 other downstream 25827 4730603 ~ 4730881 (+) False slc45a2
XR_006247451.1 other downstream 194714 4899490 ~ 4910505 (+) False fybb
XR_006247485.1 other downstream 242808 4947584 ~ 5025628 (+) False tnksa
XR_006247486.1 other downstream 242808 4947584 ~ 5025628 (+) False tnksa

Expression Profile