RNA id: XM_043221466.1


Basic Information

Item Value
RNA id XM_043221466.1
length 7925
RNA type mRNA
GC content 0.51
exon number 57
gene id sptan1
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1733733 ~ 1761705 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGCTATTTCATTCGTTGAGGTCGCCACCCGTTGCCACCCAGCCCCAGAAAAACAGAGCAAAACCTTCGGCAAGTACGCCTTGTAGCCACCCCTGAGACACCTGTTACCATGTCCAAGTTTCTTAAACCCAAACTGAAGAAAATGGATATCAGTGGAGCTAAAGTTCTGGAGTCAGCTGAGGACATCCAGGAGCGCCGTCAGCAGGTTCTTGATCGGTATCGTCGCTTCAAGGAGCTGTCTGTTGTGCGCAGACAGAAACTCGAGGACTCTTACCGGTTCCAGTTCTTCCGTCGAGATGCAGATGAGCTTGAGAAATGGATCCAAGAGAAGCTACAGATCGCCTCTGATGAGAACTACAAGGACCCCAGTAACCTACAGGGAAAGCTCCAGAAACATCAGGCCTTTGAGGCAGAGGTGCAGGCTAATTCTAGGGCCATCATTAAACTGGACGAGACTGGCAATCTCATGATATCTGAGAGCCACTTTGCATCTGAAACCATTCGaACTCGTCTAGAGGAACTTCACCGTCTGTGGGACCTCCTGCTGCAAAAGACTAAAGAGAAGGGAGTGCGTCTCCTGCAGGCCCAGAAATTGGTGCAGTACCTCCGTGAGTGTGAGGATGCCCTGGACTGGATCAGTGACAAGgAAGCCATTGCGACCTCAGAAGAGCTTGGCCAAGACCTGGAGCATGTGGAGGTTTTGCAGAAGAAATTTGAAGAGTTTCAGACAGATCTGGCGGCCCATGAGGAGCGTGTGAATGAGGTGAACCAGGCAGCCGGCAAGCTAACCCAAGAGAACCATCCTGAGGCTGAGCTCATCCTAAAGAAGCAGGAAGAGGTGAACGCTGCTTGGCAAAGGCTGAAGGGATTGGCTCAGCAAAGGCAGGGAAAACTATTTGGAGCTGCTGAGGTGCAGCGTTTCAACCGGGATGTGGATGAGACAATCAGCTGGATTAAGGAGAAGGAGCAGCTGATGGCATCTGATGATTTTGGACGTGACCTTGCCAGCGTTCAAGCCCTGCTCCGGAAACACGAGGGGCTGGAAAGAGATTTGGCAGCCTTGGAGGACAAGGTAAACACTCTTGGCGGTGAGGCAGACCGTCTGCAACAGACACACCCCCAGAATGCCTCTCAGATCCACCTGAAAAGAGATGAACTCATTACCAACTGGGAGCAGATTCGTACACTGGCAGCTGAACGACACGCTCGGCTCAATGACTCCTACAGGTTGCAGCGCTTCACTGCAGATTTCCGTGACCTGACCAGCTGGGTGACGGAGATGAAGGCTCTGATCAATGCAGATGAGCTAGCCAATGATGTGGCTGGAGCTGAGGCCCTGCTTGATCGCCACCAAGAGCATAAGGGCGAGATTGATGCTCATGAGGACAGTTTCAAATCTACTGATGAGGCTGGGCAGGCTCTGCTGAACATTGGACATTACGCTTCTGAGGAAGTCAAGGAAAAGCTGGGCATCCTGTCGGAAGAGAAAGTGTCTCTTCTGGAGCTGTGGGAGCTACGCAGGCAGCAGTATGAGCAGTGCATGGACCTGCAGCTCTTTTACAGGGACACTGAGCAGGTCGACAACTGGATGAGCAAGCAAGAGGCTTTCCTGCTAAATGAAGACTTGGGTGACTCTCTGGATAGTGTTGAAGCTCTTCTGAAAAAACATGAAGACTTTGAGAAATCCCTCAGTGCACAGGAAGAGAAGATCACTGCCCTCGATGAATTTGCCACCAAACTGATCCAGAACAATCACTATGCCAAGGAAGATGTGGCCACTCGCAGAGATGCACTGCTGAGCAGACGCAACGCTCTTCATGAGCGTGCTCAGTTTCGCCGTGCCGCCCTGGAGGACTCTTTCCATCTGCAGCAGTTCTTCCGGGACTCTGATGAGCTCAAGAGCTGGATCAATGAGAAGATGAAGACTGCCACTGATGAGGCCTACAAGGACCCATCCAACCTGCAGGGGAAGGTGCAGAAGCACCAGGCCTTCGAAGCTGAGCTCTCTGCCAATCAGAGCCGCATTGATGCACTGCAGAAGTCAGGCCAGGAGCTGATTGATGGAAAACACTACGCCTCCAGCGAGGTTTCCACCCGAATGGATGAAGTCAGCTCCCAGTGGAAGAAACTTCTAGAGGCAACTGAGCTTAAAGGGATTAAGTTGCGTGAAGCAAACCAGCAGCAGCAGTTCAATCGTAATGTAGAGGACATCGAGCTATGGTTGTATGAGGTGGAGGGACATCTAGCCTCTGATGACTTTGGCAAAGACCTGACCAGCGTCCAGAATCTTCAGAAGAAACATGCTCTGCTTGAGGCTGATGTGGCTGCTCACCAGGACCGCATTGATGGCATTACTATTCAGGCCAGGCAGTTCCAGGAGGCTGGCCATTTTGACGCTGATAACATCCGCAAAAAACAGGAGGCTTTAGTGGCACGCTACGAGGCTCTAAAAGAGCCCATGGCCGCTCGCAAACAGAAGCTGTCAGATTCCCTGCGCCTTCAGCAACTTTTCAGGGATGTGGAAGATGAGGAGACCTGGATCCGAGAGAAAGAACCTATTGCTTCCTCCACCAACAGGGGAAAAGACCTTATCGGAGTCCAGAACCTTCTGAAGAAACACCAGGCTTTGCAGGCAGAAATCTCTGGCCATGAACCCCGAATCAAGGCTGTTACTCAGAAGGGGGAGGCCATGATTGATGAAGgtcACTTTGCAGGCGAGGATGTGAAAGCTAAGTTGCAAGAGCTTCACAATCGTTGGGATGGCCTGAAGGGAAAAGCGGCCCAGCGTAGACAGGATCTGGAGGATTCTCTTCAGGCTCAGCAGTACTTTGCTGATGCCAATGAGGCTGAGTCTTGGATGAGAGAGAAGGAGCCCATTGTAGGAAGCACCGACTATGGCAAAGACGAAGACTCTGCAGAGGCTCTCCTAAAGAAGCACGAGGCACTGATGTCTGATCTGAGTGCATATGGCAGCAGCATCCAGGCCTTAAAAGAACAAGCTGAGGCCTGCAGAcaacAAGTGGCCCCCACTGATGATGAGACCGGCAAAGAGCTGGTTCTTGCGCTATACGACTATCAGGAGAAGAGTCCTCGTGAGGTCACCATGAAGAAGGGTGACATCCTCACTCTGCTCAACAGCACCAATAAGGACTGGTGGAAAGTGGAAGTGAACGACAGGCAGGGCTTTGTTCCCGCAGCGTACGTGAAGAAGTTGGACCCGACTCAGTCTTCCTCTCGTGAGAATCTGCTAAACGAACAAGGCAGCATCGCTCTGCGACAGGAGCAGATTGAGAATCAGACTGTGGTCACCAAGGAGGTTTGCAGCGTATCTGTACGCATGAAGCAGGTGGAGGAACTGTACGGTACACTGCAAGAGTTGGGAGAAAAGAGGAAGGACATGCTGGAGAAGAGCTGCAAAAAGTTCATGCTTTTCCGTGAAGCAAATGAGCTGCAGCAGTGGattaatgagaaagaatcagcGCTTACTAATGAGGAGGTCGGTTCTGATCTGGAGCAAGTGGAAGTGCTCCAGAAGAAGTTTGATGACTTCCAGAAGGATCTGAAAGCAAATGAATCTCGGCTGAGGGATATAAACAAGGTGGCTTCTGAGCTGGAGTCTGAAGGACTGATGGCTGAAGAGGCTCCTGTTGTGCAGGcccagCAAGTAGAGATGCTGGGCTCAGCTCCTGGCAAGGATGAAGCAGATTCCAAAGGTGCATCTCCATGGAAGTCTGTTCGCTTGGCTGTTCAAACAACGGCCAACTTTAATACCATTAAGgAGCTGAACAACCGCTGGAGGGCCTTGCAGCAGCTGGCTGAAGACCGAAGCAACATGCTGGGCAGTGCTCATGAGGTTCAGAGGTTCCACAGGGATGCAGATGAGACCAAGGAATGGATCGAAGAGAAGAACCAAGCCCTGAACACTGATAACTATGGCCATGACCTCGCCAGCGTGCAGGCTTTGCAGCGCAAGCACGAAGGCTTTGAGAGAGACCTGGCTGCTTTAGGAGAcaagGTGAACTCTCTTGGTGAGACAGCAGAGCGTCTGATTCAGTCTCATCCTGAGGCTGTGGACGACATCCAGGAGAAGTGCACCGAGCTAAACACAGCCTGGAGCAGCCTGGTAGGTCGAGCTGACCAACGCAAAGAAAAACTGGGAAACTCTCACGACCTGCAGCGCTTCCTCAGTGACTTCAgAGATCTCATGTCCTGGATCAATGGAATCAGAGGGCTGGTGTCTTCAGATGAGCTGGCCAAGGACGTCACTGGAGCTGAAGCCTTATTGGAGAGACATCAGGAACACCGCACTGAGATCGACGCCCGTGCTGGCACCTTCCAGGCTTTTGAGCAATTTGGACAGCAGCTGCTTGCGCGTGGCCACTATGCCAGCCCTGAGATTCAACAGAAGCTGGAGGCTCTTGAACAGGAACGTGCTGACCTGGAGAAGGCCTGGGTCCAGCGCAGGATGATGCTGGATCAGTGCCTGGAACTGCAGCTATTCAACCGTGACTGTGAGCAAGCTGAGAACTGGATGGCagctcgtgaggctttcttggCCAGCGATGACAAGGGAGACTCCCTGGACAGCGTCGAGGCTCTCATCAAGAAACATGAAGACTTTGATAAAGCTATCAATGTGCAGGAAGAGAAAATTGCAGCACTGCAGTCTTTCGCTGACCAGCTAATTAGCGCTGACCACTATGCCAAACCTGAGATCTTTAATCGCCGTAATGAAGTCTTAGATAGGTGGCGCCGTCTCAAGGCTCAGATGATTGAGAAACGCTCTAAGCTGGGTGAGTCCCAGACGCTGCAGCAGTTCAGcagagatgtagatgagatcgAAGCATGGATCAGTGAGAAACTCCAAACCGCCACTGACGAGTCTTATAAGGACCCCACCAACATCCAGCTGTCCAAGCTGCTGAGCAAGCACCAGAAGCACCAGGCTTTTGAGGCTGAGTTACACGCTAACGCTGATCGTATCCGCGGGGTGATTGACACAGGCAATGCTCTCATCCAGAGAGGTGCCTGTGCTGGAAGTGAGGATGCCGTCAAGGCTCGTCTTAATGCTCTGGATGAGCAGTGGCAGTTCCTCGTCAACAAATCTGCCGAGAAGAGTCAGAAACTGAAGGAGGCAAACAAGCAGCAGAACTTCAACACTGGTATCAAGGACTTTGACTTCTGGTTGTCTGAGGTTGAGGCTCTTCTTGCCTCTGAGGATTATGGCAAAGATCTGGCCTCAGTCAACAATCTCCTTAAGAAGCATCAGCTTTTAGAAGCTGACATCTCTGCTCATGAGgACCGTCTGAAGGATCTGAATGGCCAGGCAGACAGTCTTATGGCCAGCAATGCCTTCGACACCTCTCAGGTCAAGGACAAGCGTGATGCCGTCAACGGACGCTTTGACAAAATCAAGAGCATGGCTGCTGGGCGTCGTGCCAAGCTGAACGAGTCGCATCGTCTTCACCAGTTCTTCAGGGATCTGGATGATGAGGAATCTTGGATAAAGGAAAAGAAGTTGTTGGTGAGCTCGGAGGACTACGGACGTGATTTGACAGGAGTACAGAATCTGAGGAAGAAACACAAGAGGCTGGAGGCTGAGCTGGGAGCACACGAGCCAGCCATTCAGTCTGTACTGGAGACTGGGAAGAAGCTGTCTGATGACAACACCATTGGACAGGAGGAGATCCAGCAGAGGCTGGCCCAGTTTGTGGAGCACTGGAGGGAACTGAAAGATCTGGCTGCTGCTCGtGGACAGAGGCTTGAGGAGTCGCTGGAGTACCAGCAGTTTGTGGCAAAtgtggaggaagaggaagctTGGATTAATGAAAAACTGAACCTGGTCGGAAGTGAAGATTACGGTGATACTCTAGCAGCTGTGCAGGGGTTGCTGAAGAAACATGAAGCATTTGAAACTGATTTTACCGTGCACAGGGACAGAGTGAACGATGTTTGTTCCAATGGAGATGAACTTATCAAAAAGGAAAACCACAACGTGGAGAACATCATGGCTAAAATGAAGGCCCTGCGTGGGAAGGTGTCAGAGCTGGAGAGAGCTGCAGCTCAGAGGAAATCAAAACTGGATGAGAACTCTGCCTTCCTTCAGTTCAACTGGAAGGCTGATGTGGTGGAGTCCTGGATTGGTGAGAAGGAAAACAGCCTGAAGACTGATGACTATGGTCGCGATCTCTCCTCGGTGCAAACTCTGCTCACTAAACAGGAAACATTTGATGCTGGGCTTCAGGCCTTCCAGCAGGAGGGCATCACCAACATCACAGCCCTGAAAGACCAGCTTCTGGCTGCCAAACACGTGCAGTCCAAGGCCATTGAGGCTCGTCATGCCACTCTGATGAAGCGCTGGAACCAGCTGCTGTCCAACTCAGCCGCCCGCAAGAAGAAGCTTCTAGAGGCCCAGGAGCACTTCAGAAAGGTCGAGGATCTATTCCTCACCTTTGCCAAGAAGGCTTCAGCCTTCAACAGCTGGTTTGAGAACGCTGAAGAAGATCTGACAGACCCTGTAAGGTGCAACTCTCTGGAGGAGATCAGGGCCTTGCGGGATGCCCATGACGCCTTCCGCTCCTCACTCAGCTCTGCAGAGGCTGATTTCAACCAACTGGCTGAACTTGATCGCCAGATCAAGAGTTACCATGTGGTCTCCAATCCATACACTTGGTTCACCATGGAAGCTCTAGAGGAGACCTGGAGGAACCTTCAAAAGATCATCAAGgAGCGAGAGCTGGAGCtacagaaagagcagaggagaCAGGAAGAGAACGATAAACTCAGACAAGAGTTTGCCCAACATGCCAATGCCTTCCACCAATGGCTGCAGGAGACCAGGACATACCTTCTGGACGGGTCCTGCATGGTGGAAGAATCCGGAACTCTAGAGTCACAACTAGAGGCGACTAAGCGCAAGCACCAGGAGATTCGTGCCATGCGCAGTCAGTTGAAGAAGATCGAGGATCTGGGAGCAGCCATGGAGGAGGCGCTGATCCTGGACAACAAATATACAGAGCACAGCACTGTGGGTCTGGCCCAACAGTGGGACCAACTCGACCAACTGGGCATGAGAATGCAACACAACCTGGAACAACAGATTCAAGCCAGAAACACTACTGGAGTAACAGAAGAGGCCCTGAAGGAGTTCAGCATGATGTTCAAGCATTTCGACAAAGAAAAATCTGGACGTCTCAACCACCAGGAGTTCAAGTCCTGCCTGCGGTCTCTGGGTTACGACCTGCCCATGGTTGAAGAAGGAGAACCAGACCCAGAGTTTGAGTCTATTCTGGACATAGTGGATCCAAACAGagATGGAAACGTGTCCTTACAGGAGTACATGGCTTTCATGATCAGCCGAGAAACAGAGAACGTGAAGTCGAGTGAGGAGATCGAGAGCGCTTTCCGTGCCCTCAGCGCAGAGAACAAACCTTACGTCACCAAGGAAGAACTCTACCAGAACCTGACGAAGGAACAGGCGGACTACTGCATTTCCCATATGAAGCCCTACTTGGACAGCAAGGGCCGTGAGATCCCATCAGCTTTCGACTTTGTGGAATTCACCCGCTCGCTTTTCGTCAACTGATTCCCGGCCCCCTCGCCTGCCAGTGACCAATCGGGATGCGTTTCCCCCCCCCCTTCACAAGAACACACAGCCAAACTGCATGGATCTGAATTGAAATTCTCTATAGCACCCAGTATAGCAATATCTGTATCTTGCTATCACTCTTAATCTTGCATATTTATCTGACACTTCCTCATGCTTCACTGACAATAGTGTAGTGGATCTGTCTGCATTTTATTGTGGTTGTTTTAGCTGTTAAgtgctttgctttgtttaacAAACCTATAGAGAGGACATGCTGTAACATCACCCATGAGACTGCAGTGTGCTTAAATAAACGCTACTGGTTATAACTGGAA

Function

GO:

id name namespace
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0033268 node of Ranvier cellular_component
GO:0033270 paranode region of axon cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211223 lncRNA upstream 486925 1241871 ~ 1246809 (+) True G142977
TU211156 lncRNA upstream 497579 1229548 ~ 1236155 (+) False G142943
TU211157 lncRNA upstream 497579 1229548 ~ 1236155 (+) True G142943
TU211158 lncRNA upstream 497579 1229548 ~ 1236155 (+) False G142943
XR_006247463.1 lncRNA upstream 504679 1227998 ~ 1229055 (+) True LOC122326311
TU211465 lncRNA downstream 677 1762382 ~ 1762837 (+) True G143139
TU211466 lncRNA downstream 1771 1763476 ~ 1763743 (+) True G143140
TU211472 lncRNA downstream 3056 1764761 ~ 1765095 (+) True G143144
TU211478 lncRNA downstream 77627 1839332 ~ 1963020 (+) True G143149
TU211483 lncRNA downstream 112056 1873761 ~ 1944503 (+) True G143153
XM_043220799.1 mRNA upstream 2061 1722853 ~ 1731673 (+) True odf2a
XM_043220800.1 mRNA upstream 3531 1722853 ~ 1730203 (+) False odf2a
XM_043221064.1 mRNA upstream 456121 1258176 ~ 1277613 (+) False kiaa1328
XM_043221065.1 mRNA upstream 456121 1258205 ~ 1277613 (+) False kiaa1328
XM_043221066.1 mRNA upstream 458419 1258176 ~ 1275315 (+) True kiaa1328
XM_043221876.1 mRNA downstream 9626 1771331 ~ 1794642 (+) True specc1lb
XM_043221875.1 mRNA downstream 14610 1776315 ~ 1794642 (+) False specc1lb
XM_043221874.1 mRNA downstream 14611 1776316 ~ 1794642 (+) False specc1lb
XM_043222017.1 mRNA downstream 35237 1796942 ~ 1804912 (+) True adora2ab
XM_043221741.1 mRNA downstream 45490 1807195 ~ 1808839 (+) True snrpd3l
TU211224 other upstream 504689 1228013 ~ 1229045 (+) False LOC122326311
TU211153 other upstream 577592 1153109 ~ 1156142 (+) False glrx
TU211154 other upstream 577592 1153109 ~ 1156142 (+) False glrx
XR_006247444.1 other upstream 678387 1050838 ~ 1055347 (+) False entpd2b
TU211695 other downstream 471954 2233659 ~ 2237195 (+) True G143321
unassigned_transcript_2518 other downstream 1185147 2946852 ~ 2946923 (+) True trnaa-ugc_120
TU212076 other downstream 1554051 3315756 ~ 3317895 (+) False LOC122326950
TU212079 other downstream 1556530 3318235 ~ 3319879 (+) False LOC122326950
unassigned_transcript_2519 other downstream 1853455 3615160 ~ 3615231 (+) True trnam-cau_115

Expression Profile